Publications

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2009 : 42 Publications

Howard, J., Hall, B. and Rawlinson, W. (2009): Congenital and perinatal cytomegalovirus (CMV): has diagnosis improved in 30 years?; What’s New in Lab Technology? Dec/Jan 2008/09, 48 - 49

Zhang, L, Man, SM, Day, AS, Leach, ST, Lemberg, DA, Dutt, S, Stormon, M, Otley, A, O'Loughlin, T, Magoffin, A, Ng, PHY, Mitchell, H. (2009): Detection and isolation of non-jejuni Campylobacter species from children with Crohn's disease; J Clin Microbiol; 121(1): 54-60

Little, P.F.R., Williams, R.B., Wilkins, M.R. (2009): Inter-individual variation in expression: a missing link in biomarker biology?; Trends in Biotechnology. 27(1):5-10

Boyer, C., Bulmus, V., Priyanto, P., Teoh, W.Y., Amal, R., David, T.P. (2009): The stabilization and bio-functionalization of iron oxide nanoparticles using heterotelechelic polymers.; Journal of Materials Chemistry, 19, 111-123.

Chong, S-F., Chandrawati, R., Stadler, B., Park, J., Cho, J., Wang, Y., Jia, Z., Bulmus, V., Davis, T.P., Zelikin, A.N. & Caruso (2009): Stabilization of polymer-hydrogel capsules via thiol–disulfide exchange.; Small, DOI: 10.1002/smll.200900906

Liu, J., Liu, H., Boyer C., Bulmus V. & Davis, T.P. (2009): Approach to peptide decorated micelles via RAFT polymerization.; Journal of Polymer Science Part A:Polymer Chemistry,47(3), 899-912.

Tsoi, B.M., Beckhouse, A.G., Gelling, C.L., Raftery, M.J., Chiu, J., Tsoi, A.M., Lauterbach, L., Rogers, P.J., Higgins, V.J. and Dawes, I.W. (2009): Essential role of one-carbon metabolism and Gcn4p and Bas1p transcriptional regulators during adaptation to anaerobic growth of Saccharomyces cerevisiae; Journal of Biological Chemistry. 284(17): 11205-11215

Jungblut ADJ, Allen, MA, Burns BP, Neilan BA. (2009): Lipid biomarker analysis of cyanobacterial dominated microbial mats in meltwater ponds on the McMurdo Ice Shelf, Antarctica; Organic Geochem 40, 258-269

Allen, M.A., Goh, F., Burns, B.P. & Neilan, B.A. (2009): Bacterial, archaeal and eukaryotic diversity of microbial mat communities in the hypersaline lagoon of Shark Bay.; Geobiology 7, 82-96.

Goh, F., Allen, M.A., Kawaguchi, T., Decho, A.W., Neilan, B.A. and Burns, B.P. (2009): Determining the specific microbial populations and their spatial distribution within the stromatolite ecosystem of Shark Bay.; ISME J. 3: 383-96.

Leuko, S., Raftery, M., Burns, B.P., Walter, M.R., and Neilan, B.A. (2009): Global protein-level responses of Halobacterium salinarum NRC-1 to prolonged changes in external sodium chloride concentrations.; J Proteome Res. 8, 2218-25.

Burns, B.P., Anitori, R., Butterworth, P., Henneberger, R., Goh, F., Allen, M.A., Ibanez-Peral, R., Bergquist, P.L., Walter, M.R., Neilan, B.A. (2009): Modern analogues and the early history of microbial life.; Precambrian Res (in press)

Harder, T., and Yee, L.H. (2009): Bacterial adhesion and marine fouling; edited by C. Hellio and D. Yebra, 113-131. Oxford: Woodhead Publishing Ltd

Rechter, S., Scott, G.M., Eickhoff, J., Zielke, K., Auerochs, S., Müller, R., Stamminger, T., Rawlinson, W.D. and Marschall, M. (2009): Cyclin-dependent kinases phosphorylate the cytomegalovirus RNA export protein pUL69 and modulate its nuclear localization and activity; Journal of Biological Chemistry, in press, accepted 29th Jan, 2009, doi: 10.1074/jbc.M805693200. Available online at http://www.jbc.org/cgi/content/abstract/M805693200v1

Johal, H., Scott, G.M., Jones, R., Camaris, C., Riordan, S., Rawlinson, W.D. (2009): Mouse Mammary Tumour Virus - Like Virus (MMTV-LV) is present within the liver in a wide range of hepatic disorders and unrelated to nuclear p53 expression or hepatocarcinogenesis.; Journal of Hepatology 50: 548-554

Iwasenko, J.M., Scott, G.M., Rawlinson, W.D., Keogh, A., Mitchell, D. and Chou, S. (2009): Successful valganciclovir treatment of post-transplant cytomegalovirus infection in the presence of UL97 mutation N597D.; Journal of Medical Virology. 81:507-510

Cavicchioli, R. and Lauro, F. (2009): Effects of climate change on polar microbes.; Microbiology Australia. 30: 72-74

Williams, T., Ertan, H., Ting, L. &Cavicchioli, R. (2009): Carbon and nitrogen substrate utilization in the marine bacterium Sphingopyxis alaskensis strain RB2256.; Intl Society of Microbial Ecology Journal 3: 1036-1052

Lauro, F.M., McDougald, D., Thomas, T., Williams, T.J., Egan, S., Rice, S., DeMaere, M.Z., Ting, L., Ertan, H., Johnson, J., Ferriera, S., Lapidus, A., Anderson, I., Kyrpides, N., Munk, A.C., Detter, C., Brown, M.V., Robb, F.T., Kjelleberg, S. and Cavicchioli, R. (2009): The genomic basis of trophic strategy in marine bacteria.; Proceedings of the National Academy of Sciences USA 106: 15527–15533. (Cover story and Commentary: Church, M.J. The trophic tapestry of the sea. 15519-15520.)

Erce, M.A., Low, J.K.K., March, P.E., Wilkins, M.R. and Takayama, K.M. (2009): Identification and functional analysis of RNase E of Vibrio augustum S14 and two-hybrid analysis of its interaction partners; Biochimica et Biophysica Acta. 1794: 1107-1114

Wilkins, M.R. (2009): Hares and tortoises: The high- versus low-throughput proteomic race; Electrophoresis. 30: S150-S155

Huang, K.Y., Filarsky, M., Padula, M.P., Raftery, M.J., Herbert, B.R. and Wilkins, M.R. (2009): Micropreparative fractionation of the complexome by blue native continuous elution electrophoresis.; Proteomics. 9: 2494-2502

Fei W, Wang H, Fu X, Bielby C & Yang H (2009): Conditions of endoplasmic reticulum stress stimulate lipid droplet formation in Saccharomyces cerevisiae.; Biochem J. Aug 26. [Epub ahead of print]

Woolnough, C.A., Yee, L.E., Charlton, T. and Foster, L.J.R. (2009): Environmental degradation and biofouling of ‘green’ plastics including short and medium chain length polyhydroxyalkanoates; Polymer International, Accepted July, 2009

Siddiqui, K.S., Parkin, D.M, Curmi, P.M.G., De Francisci, D., Poljak, A., Barrow, K., Noble, M.H., Trewhella, J. and Cavicchioli, R. (2009): A novel approach for enhancing the catalytic efficiency of a protease at low temperature: reduction in substrate inhibition by chemical modification.; Biotechnology and Bioengineering. 103: 676-686

Williams, T., Ertan, H., Ting, L. and Cavicchioli, R. (2009): Carbon and nitrogen substrate utilization in the marine bacterium Sphingopyxis alaskensis strain RB2256.; International Society of Microbial Ecology Journal (published on-line May 21)

Cavicchioli, R. and Lauro, F. (2009): Effects of climate change on polar microbes.; Microbiology Australia. 30: 72-74.

Brown, M.V., Philip, G.K., Bunge, J., Smith, M.C., Bissett, A., Lauro, F., Fuhrman, J.A., and Donachie, S.P. (2009): Microbial community structure in the North Pacific Ocean.; ISMEJ (doi:10.1038/ismej.2009.86)

Xu, J., Tao L., Liu, J., Bulmus, V. & Davis, T.P. (2009): Synthesis of functionalized and biodegradable hyperbranched polymers from novel AB2 macromonomers prepared by RAFT polymerization.; Macromolecules, 42 (18), 6893-6901.

Jia, Z.F., Liu, J., Boyer, C., Davis, T.P. & Bulmus, V. (2009): Functional disulfide-stabilized polymer-protein particles.; Biomacromolecules, DOI: 10.1021/bm900817a2009.

Boyer, C., Bulmus, V., Davis, T.P., Ladmiral, V., Liu, J. & Perrier, S. (2009): Bioapplications of RAFT polymers.; Chemical Reviews, DOI: 10.1021/cr9001403.

Valade, D., Boyer, C., Davis, T.P, & Bulmus, V. (2009): Synthesis of siRNA polyplexes adopting a combination of RAFT polymerization and thiol-ene chemistry.; Australian Journal of Chemistry, accepted, CH09208.

Xu, J., Boyer, C., Bulmus, V. & Davis, T.P. (2009): Synthesis of dendritic carbohydrate end-functional polymers via RAFT: Versatile multi-functional precursors for bioconjugations.; J. of Polymer Science Part A:Polymer Chemistry, 47 (17), 4302-4313.

Boyer, C., Granville A., Davis, T.P. & Bulmus, V. (2009): Modification of RAFT-polymers via thiol-ene reactions: A general route to functional polymers and new architectures.; J. of Polymer Science Part A:Polymer Chemistry, 47 (15), 3773-3794.

Boyer, C., Liu, J., Bulmus, V. & Davis, T.P. (2009): RAFT polymer end-group modification and chain coupling/conjugation via disulfide bonds.; Australian Journal of Chemistry, 62, (8), 830-8.

Boyer, C., Bulmus, V. & Davis, T.P. (2009): Atom-efficient usage of thiocarbonates for direct biofunctionalization of polymers.; Macromol Rapid Comm., 30, 493-497.

Allen, M., Lauro, F.M., Williams, T.J., Burg, D., Siddiqui, K.S., De Francisci, D., Chong, K.W.Y., Pilak, O., Chew, H.H., De Maere, M.Z., Ting, L., Katrib, M., Ng, C., Sowers, K.R., Galperin, M.Y., Anderson, I.J., Ivanova, N., Dalin, E., Martinez, M., Lapidus, A., Hauser, L., Land, M., Thomas, T. & Cavicchioli, R. (2009): The genome sequence of the psychrophilic archaeon, Methanococcoides burtonii: the role of genome evolution in cold-adaptation.; International Society of Microbial Ecology Journal 3: 1012-1035. (Feature article)

Matallana-Surget, S., Douki, T., Cavicchioli, R. and Joux, F. (2009): Remarkable resistance to UVB of the marine bacterium Photobacterium angustum explained by an unexpected role of photolyase.; Photochemical and Photobiological Sciences 8: 1313-1320

Matallana-Surget, S., Douki, T., Cavicchioli, R. and Joux, F. (2009): Remarkable resistance to UVB of the marine bacterium Photobacterium angustum explained by an unexpected role of photolyase.; Photochemical and Photobiological Sciences 8: 1313-1320.

Matallana-Surget, S., Joux, F., Raftery, M.J. and Cavicchioli, R. (2009): The response of the marine bacterium Sphingopyxis alaskensis to solar radiation assessed by quantitative proteomics.; Environmental Microbiology (published on-line July 10)

Matallana-Surget, S., Joux, F., Raftery, M.J. and Cavicchioli, R. (2009): The response of the marine bacterium Sphingopyxis alaskensis to solar radiation assessed by quantitative proteomics.; Environmental Microbiology (published on-line July 10)

Ting, L., Cowley, M.J., Hoon, S.L., Guilhaus, M., Raftery, M.J. and Cavicchioli R. (2009): Normalization and statistical analysis of quantitative proteomics data generated by metabolic labeling.; Molecular and Cellular Proteomics (accepted July 15)

2008 : 185 Publications

Mihali TK, Kellmann R, Muenchoff J, Barrow KD, Neilan BA (2008): Characterization of the gene cluster responsible for cylindrospermopsin biosynthesis.; Applied and Environmental Microbiology 74:716-722.

Kellmann R, TK Mihali, YJ Jeon, R Pickford, F Pomati, Neilan BA (2008): Biosynthetic Intermediate analysis and functional homology reveal a saxitoxin gene cluster in cyanobacteria. Applied and Environmental Microbiology; Applied and Environmental Microbiology, July 2008, p. 4044-4053, Vol. 74, No. 13

Schleiss, M., Eickhoff, J., Auerochs, S., Leis, M. Abele, S., Rechter, S., Choi, Y., Anderson, J., Scott, G., Rawlinson, W., Mechel, D., Ensminger, S., Klebt, B., Stamminger, T., Marschall, M. (2008): Protein kinase inhibitors of the quinazoline class exert anti-cytomegaloviral activity in vitro and in vivo; Research. 79: 49 - 61

Rawlinson, W., Hall, B., Jones, C., Jeffery, H, Arbuckle, S., Graf, N., Howard, J. and Morris, J. (2008): Viruses and other infections in stillbirth: what is the evidence and what should we be doing.; Pathology manuscript number 40(2):149-160

Woon, H.G., Scott, G.M., Yiu, K-L., Miles, D.H. & Rawlinson, W.D. (2008): Identification of putative functional motifs in viral proteins essential for human cytomegalovirus DNA replication; Virus Genes, 37:193-202.

Mai-Prochnow, A., Webb S.B, Ferrari, B. C. and Kjelleberg, S. (2008): Ecological advantages of autolysis during the development and dispersal of Pseudoalteromonas tunicata biofilms.; Appl. Environ. Microbiol 72:5414-5420

Stelzer-Braid, S., Escott, R., Baleriola, C., Kirkland, P., Robertson, P., Catton, M. and Rawlinson, W. D. (2008): Proficiency of nucleic acid tests for avian influenza viruses, Australasia.; Emerging Infectious Diseases. 14: 1126 - 1128

Mawad, D., Foster, L.J.R. and Lauto, A. (2008): Drug-delivery study and estimation of polymer-solvent interaction parameter for bisacrylate ester-modified Pluronic hydrogels.; International Journal of Pharmaceutics. 360: 231-235.

Lee, K.P., S.J. Simpson, F.J. Clissold, R. Brooks, J.W.O Ballard, and D.Raubenheimer. (2008): Lifespan and reproduction in Drosophila: new insights from nutritional geometry; Proc. Nat. Acad. Sci. U.S.A 105: 2498-2503

Melvin, R.G., S.D. Katewa, and J.W.O. Ballard. (2008): A candidate complex approach to study functional mitochondrial DNA changes: Sequence variation and quaternary structure modeling of Drosophila simulans cytochrome c oxidase.; J. Mol. Evol. 66(3):232-242

TNg, C-H., Tan S-X., Perrone, G.G., Thorpe, G.W., Higgins, V.J. and Dawes, I.W. (2008): Adaptation to hydrogen peroxide in Saccharomyces cerevisiae: the role of NADPH generating systems and the Skn7 transcription factor.; Free Rad. Biol. Med. 44, 1131-1145.

Tang BMP, McLean AS, Dawes IW, Huang SJ, Cowley MJ and Lin RCY (2008): Gene-expression profiling of Gram-positive and Gram-negative sepsis in critically ill patients.; Critical Care Medicine. 36: 1125-1128.

Gelling, C., Dawes, I.W., Richhardt, N., Lill, R. and Mühlenhoff, U. (2008): Mitochondrial Iba57p is required for Fe/S cluster formation on aconitase and activation of radical SAM enzymes.; Mol. Cell. Biol. 28, 1851-1861

Tang, B.M.P., McLean A.S., Dawes I.W., Huang S.J., Lin R.C.Y. (2008): Gene-expression profiling of Gram-positive and Gram-negative sepsis in critically ill patients.; Critical Care Medicine 36, 11245-1128.

Wilkins MR, Kummerfeld SK (2008): Sticking together? Falling apart? Exploring the dynamics of the interactome.; Trends in Biochemical Sciences, 33:195-200.

Pang CNI, Chen A, Hayen A, Wilkins MR (2008): Are protein complexes composed of core, module and attachment proteins?; Proteomics 3: 425-434

Ho E, Webber R, Wilkins MR (2008): Interactive three-dimensional visualization and contextual analysis of protein interaction networks; Journal of Proteome Research 7: 104-12.

Chow, S.S.W., Craig, M.E., Jones, C. A., Hall, B., Catteau, J., Lloyd, A.R. and Rawlinson, W.D. (2008): Differences in Amniotic Fluid and Maternal Serum Cytokine Levels in Early Midtrimester Women Without Evidence of Infection; Cytokine. 44(1): 78-84

Lynch, G.W., Selleck, P.W., Axell, A.M., Downton, T., Kapitza, N., Boehm, I., Dyer, W., Wang, Y.-F.Y., Stelzer-Braid, S., Rawlinson, W. and Sullivan, J.S. (2008): Cross-Reactive Anti-Avian H5N1 Influenza Neutralizing Antibodies in a Normal ‘Exposure-Naïve’ Australian Blood Donor Population.; The Open Immunology Journal. 1:13-19

Xu, Yin., and Foong, F.C. (2008): Characterization of cellulose binding domain from Clostridium cellulovorans Endoglucanase-Xylanase D and its use as a fusion partner for soluble protein expression.; In Press. J. Biotechnology Available online. DOI information: 10.1016/j.biotec.2008.05.004

Zareie, M.H., Boyer, C., Bulmus, V., Nateghi, E. & Davis, T.P. (2008): Temperature-responsive self-assembled monolayers of oligo(ethylene glycol): control of biomolecular recognition.; ACS Nano 2: 757-765.

Lauto, A; Mawad, D. & Foster, LJR. (2008): Adhesive Biomaterials for Tissue Reconstruction; Chem. Tech. Biotech. 83:464-472

Glibert, P.M. et al., (2008): Ocean urea fertilization for carbon credits poses high ecological risks; Marine Pollution Bulletin 56 (2008) 1049–1056

Foster, LJR; Schwahn, D; Pipich, V; Holden, PJ. & Richter, D. (2008): Small-angle neutron scattering characterisation of polyhydroxyalkanoates and their bioPEGylated hybrids in solution; Biomacromolecules 9:314-320

Heredia, K.L., Nguyen, T.H., Chang, C-W., Bulmus, V., Davis, T.P. & Maynard, H.D. (2008): Reversible siRNA-polymer conjugates by RAFT polymerization; Chem. Commun. 28: 3245-3247. (Cover page article and Hot article)

Chan, Y., Wong, T., Byrne, F., Kavallaris, M. & Bulmus, V. (2008): Acid-labile core cross-linked micelles for pH-triggered release of antitumor drugs.; Biomacromolecules, 9 (7), 1826-1836.

Allen, M.A., Goh, F., Leuko, S., Igo, A.E., Mizuki, T., Usami, R., Karnekura, M., Neilan, B.A. & Burns B.P. (2008): Haloferax elongans sp nov and Haloterax mucosum sp nov., isolated from microbial mats from Hamelin Pool, Shark Bay, Australia; International Journal of Systematic and Evolutionary Microbiology. 58: 798-802.

LeBard RJ, Jensen SO, Arnaiz IA, Skurray RA and Firth N (2008): A multimer resolution system contributes to segregational stability of the prototypical staphylococcal conjugative multiresistance plasmid pSK41; FEMS Microbiology letters. 284: 58-67

Evans, F.F., Egan, S. and Kjelleberg, S. (2008): Ecology and Gene composition of Type II secretion in marine gamma proteobacteria; Environmental Microbiology 10:1101-1107

Hoke, D., Egan, S., Cullen, P.A. and Adler, B. (2008): LipL32 is an Extracellular Matrix-Interacting Protein of Leptospira and Pseudoalteromonas tunicata.; Infection and Immunity 76:12063-2069

Egan, S., Thomas, T. and Kjelleberg, S. (2008): Unlocking the diversity and biotechnological potential of marine surface associated microbial communities.; Current Opinion in Microbiology, (in press May 2008)

Wang, Y., Jackson, K. J.L., Sewell, W.A., and Collins, A.M. (2008): Many human immunoglobulin heavy-chain IGHV gene polymorphisms have been reported in error.; Immunology and Cell Biology 86: 111-115

Galea, A. M. & Murray, V. (2008): The Anti-tumour Agent, Cisplatin, and its Clinically Ineffective Isomer, Transplatin, Produce Unique Gene Expression Profiles in Human Cells.; Cancer Informatics 6, 1–41.

Schwartz T, Murray S, Seebacher F (2008): Novel reptilian uncoupling proteins: molecular evolution and gene expression during cold acclimation.; Proceedings of the Royal Society B 275, 979–985

Cairns, M. J., McFadyen, W. D. & Murray, V. (2008): The DNA sequence selectivity of maltol-containing cisplatin analogues in purified plasmid DNA and in intact human cells.; J. Inorgan. Biochem.,

Tu, E. T-V, R. A. Bull, G. E. Greening, J. Hewitt, M. J. Lyon, J. A. Marshall, C. J. McIver, W. D. Rawlinson and P. A. White (2008): Epidemics of acute gastroenteritis in 2006 were associated with the spread of norovirus GII.4 variants, 2006a and 2006b.; Clinical Infectious Disease. 46:413-420

Gill S, Chow R, Brown AJ (2008): Sterol regulators in Cellular Cholesterol Homeostasis: The Oxysterol Hypothesis Revisited and Revised; Prog. Lipid Res. (in press)

Fei W, Shi G, Gaeta B, Du X, Kuerschner L, Li P, Brown AJ, Wenk MR, Parton RG, Yang H. (2008): Fld1p, a functional homologue of human seipin, regulates the size of lipid droplets in yeast; J Cell Biol;180:473-482

Wong J, Quinn CM, Gelissen IC, Brown AJ. (2008): Endogenous 24(S),25-epoxycholesterol fine-tunes acute control of cellular cholesterol homeostasis.; J Biol Chem;283:700-707

Yan D, Mäyränpää MI, Wong J, Perttilä J, Lehto M, Jauhiainen M, Kovanen PT, Ehnholm C, Brown AJ, Olkkonen VM. (2008): OSBP-related protein 8 (ORP8) suppresses ABCA1 expression and cholesterol efflux from macrophages.; J Biol Chem;283:332-340

Zhang L, Su P, Henriksson A, O’Rourke J, Mitchell H. (2008): Investigation of the immunomodulatory effects of Lactobacillus casei and Bifidobacterium lactis on Helicobacter pylori infection; Helicobacter, 13 (3): 183-190

Neilan B A Murray S Chen M (2008): Genomic contributions to understanding the evolution of red algal plastids and pigment biosynthesis.; In: Seckbach, J, (ed). Springer Verlag. (In press, accepted 28/5/08)

Tozer, S., Whiley, D.M., Lum,G., Rawlinson, W.D., Sammels, L.M., Sloots, T.P. and Nissen, M.D (2008): Identification of Australian human respiratory syncytial virus strains containing a 60-nucleotide duplication within the G glycoprotein gene.; Pathology. 40: 6, 632 - 635

Siddiqui, KS and Thomas T. (2008): Protein adaptation to High Pressure Environments; Editor. Nova Science Publishers, Inc., Hauppauge, NY, USA

Mai-Prochnow A, Lucas-Elio P, Egan S, Thomas T, Webb JS, Sanchez-Amat A, Kjelleberg S (2008): Hydrogen peroxide linked to lysine oxidase activity facilitates biofilm differentiation and dispersal in several Gram negative bacteria; Journal of Bacteriology. 2008 May 23.

Mok, Myth T.S., Lutze-Mann, L., Lawson, JS and Whitaker, NJ (2008): Integration of a mouse mammary tumor virus-like env sequence with a rodent-like sequence in human MCF-7 breast cancer cells; . International J. Cancer, 122, 2864-2870

Man S, Zhang L, Day A, Leach S, Mitchell H. (2008): Detection of enterohepatic and gastric Helicobacter species in fecal specimens of children with Crohn’s disease; Helicobacter, 13(4):234-8

Kenny MC, Wilton AN and Ballard, JWO (2008): Seasonal trade-off between starvation resistance and cold resistance in temperate wild-caught Drosophila simulans.; Australian Journal of Entomology 47: 20-23

Shearman JR, Lau VM and Wilton AN (2008): Elimination of SETX, SYNE1 and ATCAY as the cause of cerebellar abiotrophy in Australian Kelpies; Animal Genetics Avail online early doi:10.1111/j.1365-2052.2008

Low CP, Shui G, Liew LP, Buttner S, Madeo F, Dawes IW, Wenk MR, and Yang H. (2008): Caspase Dependent and Independent Lipotoxic Cell Death Pathways in the Fission Yeast; J. Cell Sci. in press

Leach, TS., Mitchell, MH., Eng, RW., Zhang, L., Day, SA. (2008): Sustained modulation of intestinal bacteria by exclusive enteral nutrition used to treat children with Crohn's disease; Alimentary Pharmacology & Therapeutics; 28:724-733

Low CP and Yang H. (2008): Programmed Cell Death in Fission Yeast Schizosaccharomyces pombe .; BBA-Molecular Cell Research. Feb 15; [Epub ahead of print]

Fei W, Alfaro G, Muthusamy BP, Klaassen Z, Graham TR, Yang H, Beh CT. (2008): Genome-wide analysis of sterol-lipid storage and trafficking in Saccharomyces cerevisiae; Eukaryotic Cell.; 7(2): 401-14

Chung, P., Hyne, R., Mann, R. & Ballard, JW. (2008): Genetic and life-history trait variation of the amphipod Melita plumulosa from polluted and unpolluted waterways in eastern Australia; Science of the Total Environment, 403(1-3): 222-229

Lam, C., Grage, A., Schulz, D., Schulte, A., Harder, T. (2008): Extracts of North Sea macroalgae reveal specific activity patterns against attachment and proliferation of benthic diatoms: a laboratory study.; Biofouling. 24: 59-66

Bradley A., Kovács I., Gatherer D., Dargan D., Alkharsah K., Chan P., Carman B., Dedicoat M., Emery V., Geddes C., Gerna G., Ben-Ismaeil B., Kaye S., McGregor A., Moss P., Pusztai R., Rawlinson W., Scott G., Wilkinson G., Schulz T., Davison, A. (2008): Genotypic analysis of two hypervariable human cytomegalovirus genes.; Journal of Medical Virology, 80 (9): 1615 - 1623

Howard, J., Hall, B. and Rawlinson, W (2008): Congenital and perinatal cytomegalovirus (CMV): has diagnosis improved in 30 years?; Microbiology Australia. 9 (4):176 - 178

Huynh, K.B., Oliver, B.G., Stelzer ,S., Rawlinson ,W.D. and Tovey, E.R. (2008): A new method for sampling and detection of exhaled respiratory virus aerosols.; Clinical Infectious Diseases. 46:93–95

Van Voorhies, WA., Melvin, RG., Ballard, JW. & Williams, J. (2008): Validation of manometric microrespirometers for measuring oxygen consumption in small arthropods; I Journal of Insect Physiology, 54(7): 1132-1137

Lam, C., Stang, A. and Harder, T. (2008): Planktonic bacteria and fungi are selectively eliminated by exposure to marine macroalgae in close proximity; FEMS Microbiol Ecol. 63: 283-291

Harder, T. (2008): Marine Epibiosis: Concepts, Ecological Consequences and Host Defence; Marine and Industrial Biofouling, Heidelberg, Springer, 219-231

Dubber, D. and Harder, T. (2008): Extracts of Ceramium rubrum, Mastocarpus stellatus and Laminaria digitata inhibit growth of marine and fish pathogenic bacteria at ecologically realistic concentrations; Aquaculture. 274: 196-200

Esser, F., Winterberg, M., Sebesvari, Z., and Harder, T. (2008): Effect of halogenated metabolites from infaunal polychaetes on larval settlement of the spionid polychaete Streblospio benedicti.; Mar Ecol Prog Ser. 355: 161-172

Ballard, JW., Melvin, RG. & Simpson, SJ. (2008): Starvation resistance is positively correlated with body lipid proportion in five wild caught Drosophila simulans populations; Journal of Insect Physiology, 54(9): 1371 - 1376

Gunawan C., Breuer, M., Hauer, B., Rogers, P.L., Rosche, B. (2008): Improved (R)-phenylacetylcarbinol production with Candida utilis pyruvate decarboxylase at decreased organic to aqueous phase volume ratios.; Biotech Letters 30: 281-286

Woolnough, C.A., Charlton, T., Yee, L.H., Sarris, M. and Foster, L.J.R. (2008): Surface changes in polyhydroxyalkanoate films during biodegradation and biofouling.; Polymer International, 57:1042-1051

Janitz, M. (2008): Next-generation genome sequencing - towards personalized medicine.; Ed.: Janitz M; Wiley-VCH, Heidelberg, ISBN: 978-3-527-32090-5

Couttas TA, Raftery MJ, Wilkins MR (2008): Immonium ion scanning for the discovery of post-translational modifications and its application to histones; Journal of Proteome Research, 7, 2632–2641

Alagappan, A., Tujula, N.A., Power, M., Ferguson, C.M., Bergquist, P.L. & Ferrari, B.C. (2008): Development of fluorescent in situ hybridisation for Cryptosporidium detection reveals zoonotic and anthroponotic transmission of sporadic cryptosporidiosis in Sydney.; Journal of Microbiological Methods. 75: 535-539

Niesner, U., Albrecht, I., Janke, M., Doebis, C., Loddenkemper, C., Lexberg, M.H., Eulenburg, K., Kreher, S., Koeck, J., Baumgrass, R., Bonhagen, K., Kamradt, T., Enghard, P., Humrich, J.Y., Rutz, S., Schulze-Topphoff, U., Aktas, O., Bartfeld, S., Radbruch, H., Hegazy, A.N., Löhning, M., Baumgart, D.C., Duchmann, R., Rudwaleit, M., Thomas Haeupl, T., Gitelman, I., Krenn, V., Gruen, J., Sieper, J., Zeitz, M., Wiedenmann, B., Zipp, F., Hamann, A., Janitz, M., Scheffold, A., Burmester, G.R., Chang, H.D., Radbruch, A. (2008): Autoregulation of Th1-mediated inflammation by twist1 .; J Exp Med. 205(8):1889-901

Aladaileh, S., Mohammad, M.G., Ferrari, B., Nair S.V. & Raftos, D.A. (2008): In vitro effects of noradrenaline on Sydney rock oyster (Saccostrea glomerata) hemocytes.; Comparative Biochemistry and Physiology a-Molecular & Inegrative Physiology. 151: 691-697

Sheppard, A.E., Ayliffe, M.A., Blatch, L., Day, A., Delaney, S.K., Khairul-Fahmy, N., Li, Y., Madesis, P., Pryor, A.J. and Timmis, J.N. (2008): Transfer of plastid DNA to the nucleus is elevated during male gametogenesis in tobacco.; Plant Physiol. 148(1):328-36. PMID: 18660434

Fiebitz, A., Nyarsik, L., Haendler, B., Hu, Y-H., Wagner, F., Thamm, S., Lehrach, H., Janitz, M. and Vanhecke, D. (2008): High-throughput mammalian two-hybrid screening for protein-protein interactions using transfected cell arrays; BMC Genomics. 9:68

Krycer, J.R., Pang, C.N.I. and Wilkins, M.R. (2008): High throughput protein-protein interaction data: clues for the architecture of protein complexes.; Proteome Science. 6:32

Wilkins, M.R., Arthur, J.W., Junius, F.K., Harrison, M.J., Traini, M.D., Bizannes, P., Doggett, P.E. and McDonald, W. (2008): Information management for proteomics: a perspective.; Expert Reviews Proteomics. 5(5):663-78.

Deshpande, N., Wilkins, M.R., Packer, N.H. and Nevalainen, H. (2008): Protein glycosylation pathways in filamentous fungi; Glycobiology. 18:626-37

van Holst Pellekaan, SM (2008): The first boat people.; American Journal of Human Biology: 20: 195-196

van Holst Pellekaan, SM (2008): Origins of the Australian and New Guinea Aborigines; In: Encyclopaedia of Life Sciences (Eds) John Wiley & Sons, Chichester, pp:DO1: 10.1002/9780470015902.a00208

Ferrari, B.C., Winsley, T., Gillings, M. and Binnerup, S. (2008): Cultivating previously uncultured soil bacteria using a soil substrate membrane system.; Nature Protocols. 3: 1261-1269

Ibanez-Peral, R., Bergquist, P.L., Walter, M.R., Gibbs, M., Goldys, E.M. and Ferrari, B. (2008): Potential use of quantum dots in flow cytometry; International Journal of Molecular Sciences. 9: 2622-2638.

Kellmann, R., Michali, T.K. and Neilan, B.A. (2008): Identification of a saxitoxin biosynthesis gene with a history of frequent horizontal gene transfers.; Journal of Molecular Evolution. 67: 526-538.

Neilan, B.A., Pearson, L.A., Moffitt, M.C., Mihali, K.T., Kaebernick, M., Kellmann, R. and Pomati, F. (2008): The genetics and genomics of cyanobacterial toxicity.; Advances in Experimental Medicine and Biology. 619: 417-452.

Pearson, L.A., Moffitt, M.C., Ginn, H.P. and Neilan, B.A. (2008): The molecular genetics and regulation of cyanobacterial peptide hepatotoxin biosynthesis.; Critical Reviews in Toxicology. 38: 847-856

Pegram, R.A., Nichols, T., Etheridge, S., Humpage, A., LeBlanc, S., Love, A., Neilan, B.A., Pflugmacher, S., Runnegar, M. and Thacker, R. (2008): Cyanotoxins Workgroup Report; Advances in Experimental Medicine and Biology. 619: 317-381

Miller, K., Neilan, B. and Sze, D.M.Y. (2008): Development of taxol and other endophyte produced anti-cancer agents.; Recent Patents on Anti-Cancer Drug Discovery. 3: 14-19.

Pearson, L.A., Hisbergues, M., Borner, T., Dittmann, E. and Neilan, B.A. (2008): Inactivation of an ABC transporter, mcyH, results in loss of microcystin production in the cyanobacterium Microcystis aeruginosa PCC 7806.; Advances in Experimental Medicine and Biology. 619: 467-468.

Pomati F, Khan S, Zuccato E, Neilan BA and Burns BP. (2008): Pharmaceuticals in the environment and their impacts on water re-use.; In: Aquatic Toxicology Research Focus. Svenson EP (Eds). Nova Science Publisher, New York, pp 31-49.

Burns, B.P., Walter, M.R. and Neilan, B.A. (2008): Stromatolites.; In: From Fossils to Astrobiology. Seckbach J and Walsh M (Eds). Springer, New York, pp 143-158.

Castiglioni, S., Pomati, F., Miller, K., Burns, B.P., Zuccato, E., Calamari, D. and Neilan, B.A. (2008): Novel homologs of the multiple resistance regulator marA in antibiotic-contaminated environments.; Water Research. 42: 4271-4280

Jeon, Y.J., Fong, J.C.N., Riyanti, E.I., Neilan, B.A., Rogers, P.L. and Svenson, C.J. (2008): Heterologous expression of the alcohol dehydrogenase (adhI) gene from Geobacillus thermoglucosidasius strain M10EXG.; Journal of Biotechnology. 135: 127-133

Pearson, L.A. and Neilan, B.A. (2008): The molecular genetics of cyanobacterial toxicity as a basis for monitoring water quality and public health risk.; Current Opinion in Biotechnology. 19: 281-288

Case, R.J., Labbate, M. and Kjelleberg, S. (2008): AHL-driven quorum-sensing circuits: their frequency and function among the Proteobacteria.; ISME Journal. 2: 345-349

Leuko, S., Goh, F., Ibanezz-Peral, R., Burns, B.P., Walter, M.R. and Neilan, B.A. (2008): I Lysis efficiency of standard DNA extraction methods for Halococcus spp. in an organic rich environment.; Extremophiles. 12: 301-308.

Eloe, E.A., Lauro, F.M., Vogel, R.F. and Bartlett, D.H. (2008): The deep-sea bacterium Photobacterium profundum SS9 is capable of swimming and swarming at high pressure.; Applied and Environmental Microbiology. 74: 6298-6305.

Fernandez, H.R., Batten, M., Kugathasan, K. and Lutze-Mann, L.H. (2008): Long-term mutagenic effects of ionising radiation on mice which vary in their p53 status.; DNA Repair. 7: 641-647.

Fei W, Shui G, Gaeta B, Du X, Kuerschner L, Li P, Brown AJ, Wenk MR, Parton RG & Yang H (2008): Fld1p, a functional homologue of human seipin, regulates the size of lipid droplets in yeast.; J. Cell Biol. 180: 473-482. (Selected as an editorial highlight by JCB)

Beckhouse AG, Grant CM, Rogers PJ, Dawes IW and Higgins VJ. (2008): The adaptive response of anaerobically grown Saccharomyces cerevisiae to hydrogen peroxide is mediated by the Yap1 and Skn7 transcription factors.; FEMS Yeast Research. 8: 1214-1222.

Bek, E. and Wilkins, M.R. (2008): Using yeast to study protein-protein interactions relevant to disease.; In: Yeast as a Model for Human Disease. Witt S (Eds). Signpost Research Press, Kerala, India, pp in press.

Brown, A.J. (2008): Viral hepatitis and fatty liver disease: how an unwelcome guest makes pate of the host.; The Biochemical Journal. 416: e15-17.

Boyer, C., Liu, J., Bulmus, V., Davis, T.P., Barner-Kowollik, C. & Stenzel, M.H. (2008): Direct synthesis of well-defined heterotelechelic polymers for bioconjugations.; Macromolecules. 41 (15): 5641-5650

Boyer, C., Liu, J., Wong, L., Tippett, M., Bulmus, V. & Davis, T.P. (2008): Stability and utility of pyridyl disulfide functionality in RAFT and conventional radical polymerizations.; Journal of Polymer Science Part A-Polymer Chemistry. 46: 7207-7224.

Chiu, J., Tillett, D., Dawes, I.W. and March, P.E. (2008): Site-directed, Ligase-Independent Mutagenesis (SLIM) for highly efficient mutagenesis of plasmids greater than 8kb.; Journal of Microbiological Methods. 73: 195-198.

Collins, A.M., Wang, Y., Singh, V., Yu, P., Jackson, K.J. and Sewell, W.A. (2008): The reported germline repertoire of human immunoglobulin kappa chain genes is relatively complete and accurate.; Immunogenetics. 60: 669-676.

Couttas TA, Raftery MJ, Bernardini G and Wilkins MR (2008): Immonium ion scanning for the discovery of post-translational modifications and its application to histones.; Journal of Proteome Research. 7: 2632-2641.

Dilda, P.J., Perrone, G.G., Philp, A., Lock, R.B., Dawes, I.W. and Hogg, P.J. (2008): Insight into the selectivity of arsenic trioxide for acute promyelocytic leukemia cells by characterizing Saccharomyces cerevisiae deletion strains that are sensitive or resistant to the metalloid.; International Journal of Biochemistry & Cell Biology. 40: 1016-1029.

Elledge, A.E., Allen, L.R., Carlsson, B.L., Wilton, A.N. and Leung, L.K.P. (2008): An evaluation of genetic analyses, skull morphology and visual appearance for assessing dingo purity: implications for dingo conservation.; Wildlife Research. 35: 812-820

Dinnes, D.L.M., Marcal, H., Raftery, M.J., Labow, R.S. and Mahler, S.M. (2008): The macrophage-biomaterial interface: a proteomic analysis of the conditioned medium environment.; Journal of Chemical Technology and Biotechnology. 83: 482-495.

Lauro, F.M. and Bartlett, D.H. (2008): Prokaryotic lifestyles in deep sea habitats.; Extremophiles. 12: 15-25.

Lauro, F.M., Tran, K., Vezzi, A., Vitulo, N., Valle, G. and Bartlett, D.H. (2008): Large-scale transposon mutagenesis of Photobacterium profundum SS9 reveals new genetic loci important for growth at low temperature and high pressure.; Journal of Bacteriology. 190: 1699-1709.

Feng L, Reeves PR, Lan R, Ren Y, Gao C, Zhou Z, Cheng J, Wang W, Wang J, Qian W, Li D and Wang L. (2008): A recalibrated molecular clock and independent origins for the cholera pandemic clones.; PLoS One. 3: e4053

Feng, L., Reeves, P.R., Lan, R., Ren, Y., Gao, C., Zhou, Z., Cheng, J., Wang, W., Wang, J., Qian, W., Li, D. & Wang, L. (2008): A recalibrated molecular clock and independent origins for the cholera pandemic clones.; PLoS One. 3: e4053

Fock, K.M., Talley, N., Moayyedi, P., Hunt, R., Azuma, T., Sugano, K., Xiao, S.D., Lam, S.K., Goh, K.L., Chiba, T., Uemura, N., Kim, J.G., Kim, N., Ang, T.L., Mahachai, V., Mitchell, H., Rani, A.A., Liou, J.M., Vilaichone, R.K. and Sollano, J. (2008): Asia-Pacific consensus guidelines on gastric cancer prevention.; Journal of Gastroenterology and Hepatology. 23: 351-365.

Pereira, T., Nikodinovic, J., Nakazono, C., Dennis, G.R., Barrow, K.D. and Chuck, J. (2008): Community structure and antibiotic production of Streptomyces nodosus bioreactors cultured in liquid environments.; Microbial Biotechnology. 1: 373-381

Fong, C.S, Temple, M.D., Alic, N., Chiu, J., Durchdewald, M., Thorpe, G., Higgins, V.J. and Dawes, I.W. (2008): Oxidant-induced cell-cycle delay in Saccharomyces cerevisiae: the involvement of the SWI6 transcription factor.; FEMS Yeast Research. 8: 386-399

Helal, M., El-Gindy, H., Mullin, L. and Gaeta, B. (2008): Parallelizing optimal multiple sequence alignment by dynamic programming.; In: International Symposium on Parallel and Distributed Processing with Applications, pp 669-674.

Herst, P.M., Perrone, G.G., Dawes, I.W., Bircham, P.W. and Berridge, M.V. (2008): Plasma membrane electron transport in Saccharomyces cerevisiae depends on the presence of mitochondrial respiratory subunits.; FEMS Yeast Research. 8: 897-905

Huggett, M.J., Crocetti, G.R., Kjelleberg, S. and Steinberg, P.D. (2008): Recruitment of the sea urchin Heliocidaris erythrogramma and the distribution and abundance of inducing bacteria in the field.; Aquatic Microbial Ecology. 53: 161-171

Jensen, P.R .and Lauro, F.M. (2008): An assessment of actinobacterial diversity in the marine environment.; Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology. 94: 51-62.

Huggett MJ, Crocetti GR, Kjelleberg S and Steinberg PD. (2008): Recruitment of the sea urchin Heliocidaris erythrogramma and the distribution and abundance of inducing bacteria in the field.; Aquatic Microbial Ecology. 53: 161-171

Perrone, G.G., Tan, S.X. and Dawes, I.W. (2008): Reactive oxygen species and yeast apoptosis.; Biochimica Et Biophysica Acta-Molecular Cell Research. 1783: 1354-1368.

Perrone GG, Tan SX and Dawes IW. (2008): Reactive oxygen species and yeast apoptosis.; Biochimica Et Biophysica Acta-Molecular Cell Research. 1783: 1354-1368.

Platt MD, Schurr MJ, Sauer K, Vazquez G, Kukavica-Ibrulj I, Potvin E, Levesque RC, Fedynak A, Brinkman FSL, Schurr J, Hwang SH, Lau GW, Limbach PA, Rowe JJ, Lieberman MA, Barraud N, Webb J, Kjelleberg S, Hunt DF and Hassett DJ. (2008): Pseudomonas aeruginosa at pH 6.5, likely representing chronic, late-stage cystic fibrosis airway conditions.; Journal of Bacteriology. 190: 2739-2758

Pomati, F., Orlandi, C., Clerici, M., Luciani, F. and Zuccato, E. (2008): Effects and interactions in an environmentally relevant mixture of pharmaceuticals.; Toxicological Sciences. 102: 129-137

Reyes, J.F., Francis, A.R. and Tanaka, M.M. (2008): Models of deletion for visualizing bacterial variation: An application to tuberculosis spoligotypes.; BMC Bioinformatics. 9: 496.

Rice, S.A., McDougald, D., Givskov, M. and Kjelleberg, S. (2008): Detection and inhibition of bacterial cell-cell communication.; In: Bacterial Pathogenesis: Methods and Protocols. DeLeo F and Otto M (Eds). Humana Press Inc, Totowa, NJ, pp

Rogers, P. (2008): Generation gap.; Chemical Engineer. 807: 46-48.

Russell, R.A., Holden, P.J., Wilde, K.L., Garvey, C.J., Hammerton, K.M. and Foster, L.J.R. (2008): In vivo deuteration strategies for neutron scattering analysis of bacterial polyhydroxyoctanoate.; European Biophysics Journal. 37: 711-715.

Sharpe, L.J. and Brown, A.J. (2008): Rapamycin down-regulates LDL-receptor expression independently of SREBP-2.; Biochemical and Biophysical Research Communications. 373: 670-674

Sharpe, L.J., Du, X. and Brown, A.J. (2008): Approaches to investigate the role of signaling in ER-to-Golgi transport.; Methods in Molecular Biology. 457: 215-225

Shearman, J.R., Lau, V.M. and Wilton, A.N. (2008): Elimination of SETX, SYNE1 and ATCAY as the cause of cerebellar abiotrophy in Australian Kelpies.; Animal Genetics. 39: 573

Su, P., Henriksson, A., Nilsson, C. and Mitchell, H. (2008): Synergistic effect of green tea extract and probiotics on the pathogenic bacteria, Staphylococcus aureus and Streptococcus pyogenes .; World Journal of Microbiology and Biotechnology. 24: 1837-1842.

Summons, R.E., Hope, J.M., Swart, R. and Walter, M.R. (2008): Origin of Nama Basin bitumen seeps: Petroleum derived from a Permian lacustrine source rock traversing southwestern Gondwana.; Organic Geochemistry. 39: 589-607.

Scleiss, M., Eickhoff, J., Auerochs, S., Leis, M, Abele, S., Rechter, S., Choi, Y., Anderson, J., Scott, G., Rawlinson, W., Michel, D., Ensminger, S., Klebl, B., Stamminger, T., Marschall, M. (2008): Protein kinase inhibitors of the quinazalone class exert anti-cytomegaloviral activity in vitro and in vivo; Antiviral Research 79(1):49-61

Tang, C., Reyes, J.F., Luciani, F., Francis, A.R. and Tanaka, M.M. (2008): spolTools: online utilities for analyzing spoligotypes of the Mycobacterium tuberculosis complex.; Bioinformatics. 24: 2414-2415.

Tay, C.Y., Reeves, P.R. and Lan, R. (2008): Importation of the major pilin TcpA gene and frequent recombination drive the divergence of the Vibrio pathogenicity island in Vibrio cholerae.; FEMS Microbiology Letters. 289: 210-218.

Thomas, T., Evans, F.F., Schleheck, D., Mai-Prochnow, A., Burke, C., Penesyan, A., Dalisay, D.S., Stelzer-Braid, S., Saunders, N., Johnson, J., Ferriera, S., Kjelleberg, S. and Egan, S. (2008): Analysis of the Pseudoalteromonas tunicata genome reveals properties of a surface-associated life style in the marine environment.; PLoS One. 3: e3252.

Toh, S.Y., Gong, J., Du, G., Li, P., Yang, S., Ye, J., Yao, H., Yan, J., Xue, B., Li, Q., Yang, H., Wen, Z .and Li, P. (2008): Up-regulation of mitochondrial activity and acquirement of brown adipose tissue-like property in the white adipose tissue of Fsp27 deficient mice; PLoS One. 3:

Tu, E.T.V., Bull, R.A., Kim, M.J., McIver, C.J., Heron, L., Rawlinson, W.D. and White, P.A. (2008): Norovirus excretion in an aged-care setting.; Journal of Clinical Microbiology. 46: 2119-2121.

Udwary, D.W., Kalaitzis, J.A. and Moore, B.S. (2008): Emerging Marine Biotechnologies - Cloning of Marine Biosynthetic Gene Clusters.; In: Oceans and Human Health - Risks and Remedies from the Seas. Walsh PJ, Smith SL, Flemming LE, Solo-Gabriele H and Gerwick WH (Eds). Elsevier, St Louis, pp 507-524.

Venturi, V., Kedzierska, K., Tanaka, M.M., Turner, S.J., Doherty, P.C. and Davenport, M.P. (2008): Method for assessing the similarity between subsets of the T cell receptor repertoire.; Journal of Immunological Methods. 329: 67-80

Voravuthikunchai, S.P. and Mitchell, H. (2008): Inhibitory and killing activities of medicinal plants against multiple antibiotic-resistant Helicobacter pylori .; Journal of Health Science. 54: 81-88.

Wilkins, M.R. (2008): Biomarker identification: the role of experimental design, statistics and data sharing.; In: Clinical Proteomics: from Diagnosis to Therapy. J. Van Eyk MD (Eds). Wiley-VCH, Weinham, pp 113-120.

Willcox, M.D.P., Zhu, H., Conibear, T.C.R., Hume, E.B.H., Givskov, M., Kjelleberg, S. and Rice, S.A. (2008): Role of quorum sensing by Pseudomonas aeruginosa in microbial keratitis and cystic fibrosis.; Microbiology-SGM. 154: 2184-2194.

Wong, J., Quinn, C.M., Gelissen, I.C., Jessup, W. and Brown, A.J. (2008): The effect of statins on ABCA1 and ABCG1 expression in human macrophages is influenced by cellular cholesterol levels and extent of differentiation; Atherosclerosis. 196: 180-189

Wong, L.J., Boyer, C., Jia, Z.F., Zareie, H.M., Davis, T.P. & Bulmus V. (2008): Synthesis of versatile thiol-reactive polymer scaffolds via RAFT polymerization.; Biomacromolecules. 9 (7): 1934-1944.

Woon, H.G., Scott, G.M., Yiu, K-L., Miles, D.H. & Rawlinson, W.D. (2008): Identification of putative functional motifs in viral proteins essential for human cytomegalovirus DNA replication.; Virus Genes 37:193-202.

Fuhrman, J.A., Steele, J.A, Hewson, I., Schwalbach, M.S., Brown, M.V., Green, J.L. and Brown J. (2008): Latitude diversity gradient for marine bacterioplankton.; Proceedings of the National Academy of Science, USA. 105: 7774-7778

Jia, Z.F., Wong, L-J., Davis, T.P. & Bulmus, V. (2008): One-pot cconversion of RAFT-generated multifunctional block copolymers of HPMA to doxorubicin conjugated acid- and reductant-sensitive crosslinked micelles.; Biomacromolecules. 9 (11): 3106-3113

Johns, R.E., El-Sayed, M.E., Bulmus, V., Cuschieri, J., Maier, R., Hoffman, A.S. & Stayton, P.S. (2008): Mechanistic analysis of macrophage response to IRAK-1 gene knockdown by a smart polymer-antisense oligonucleotide therapeutic.; Journal of Biomaterials Science. Polymer Edition. 19 (10): 1333-1346.

Kalaitzis, J.A., Leone, P., Hooper, J.N.A. and Quinn, R.J. (2008): Ianthesine E, A new bromotyrosine-derived metabolite from the Great Barrier Reef sponge Pseudoceratina sp.; Natural Products Research. 22: 1257-1263.

Kato, C., Sato, T., Abe, R., Ohmae, E., Tamegai, H., Nagason, K., Siddiqui, K.S. and Thomas, T. (2008): Protein adaption in extremophiles.; In: Protein Adaption to High Pressure Environments. Siddiqui KS and Thomas T (Eds). Nova Sciences, New York, pp 167-192.

Kjelleberg, S., McDougald, D., Rasmussen, T.B. and Givskov, M. (2008): Quorum sensing inhibition; In: Chemical Communication Among Bacteria. Winans SC and Bassler BL (Eds). ASM Press, Washington D.C., pp 393-416

Kofod, M., Quinnell, R., Rifkin, W. and Whitaker, N.J. (2008): Is tutor training worth it? Acknowledging conflicting agenda.; In: HERDSA (Higher Education Research and Development Society of Australasia), Rotorua, N.Z., pp 273.

Kristiana, I., Yang, H.Y. and Brown, A.J. (2008): Different kinetics of cholesterol delivery to components of the cholesterol homeostatic machinery: Implications for cholesterol trafficking to the endoplasmic reticulum.; Biochimica Et Biophysica Acta-Molecular and Cell Biology of Lipids. 1781: 724-730.

Kwong, S.M., Lim, R., LeBard, R.J., Skurray, R.A. and Firth, N. (2008): Analysis of the pSK1 replicon, a prototype from the staphylococcal multiresistance plasmid family.; Microbiology-SGM. 154: 3084-3094.

Lauto, A., Foster, L.J., Avolio, A., Sampson, D., Raston, C., Sarris, M., McKenzie, G. and Stoodley, M. (2008): Sutureless nerve repair with laser-activated chitosan adhesive: A pilot in vivo study.; Photomedicine and Laser Surgery. 26: 227-234.

Lawson, J.S., Glenn, W.K. and Whitaker, N.J. (2008): Reply: Breast cancer, human papilloma virus and sexual activities.; British Journal of Cancer. 98: 510-511

Leach ST, Mitchell HM, Eng WR, Zhang L and Day AS. (2008): Sustained modulation of intestinal bacteria by exclusive enteral nutrition used to treat children with Crohn's disease.; Alimentary Pharmacology & Therapeutics. 28: 724-733.

Pang CNI and Wilkins MR (2008): Online resources for the molecular contextualization of disease.; In: Clinical Bioinformatics. Trent RJA (Eds). Humana Press, Totowa, pp 287-308.

Leach ,S.T., Mitchell, H.M., Geczy, C.L., Sherman, P.M. and Day, A.S. (2008): S100 calgranulin proteins S100A8, S100A9 and S100A12 are expressed in the inflamed gastric mucosa of Helicobacter pylori-infected children.; Canadian Journal of Gastroenterology. 22: 461-464.

LeBard, R.J. and Quinnell, R. (2008): Using assessment audits to understand students’ learning obstacles.; In: Symposium Proceedings: Visualisation and Concept Development, UniServe Science, The University of Sydney, Sydney, pp 182-187.

Liu, J., Liu, H., Jia, Z., Bulmus, V. & Davis, T.P. (2008): An approach to biodegradable star polymeric architectures using disulfide coupling.; Chemical Communications, 48: 6582-6584.

McDougald, D., Klebensberger, J., Tolker-Nielsen, T., Webb, J.S., Conibear, T., Rice, S., Kirov, S. and Kjelleberg, S. (2008): Pseudomonas aeruginosa: a model for biofilm formulation.; In: Pseudomonas. Modal Organism, Pathogen, Workhorse. Rehm B (Eds). WILEY-VCH Verlag GmbH and Co, Weinheim, pp 215-253.

Mitchell, H., English, D.R., Elliott, F., Gengos, M., Barrett, J.H., Giles, G.G. and Forman, D. (2008): Immunoblotting using multiple antigens is essential to demonstrate the true risk of Helicobacter pylori infection for gastric cancer.; Alimentary Pharmacology and Therapeutics. 28: 903-910

Ng, C.H., Tan, S.X., Perrone, G.G., Thorpe, G.W., Higgins, V.J. and Dawes, I.W. (2008): Adaptation to hydrogen peroxide in Saccharomyces cerevisiae: The role of NADPH-generating systems and the SKN7 transcription factor.; Free Radical Biology and Medicine. 44: 1131-1145

O'Rourke, J.L. (2008): Gene expression profiling in Helicobacter-induced MALT lymphoma with reference to antigen drive and protective immunization.; Journal of Gastroenterology and Hepatology. 23: S151-156.

Lingaas, F., Thoresen, S.I. and Wilton, A. (2008): Gentest tilgjengelig for ”Trapped Neutrophile Syndrome” (TNS): en ”ny” arvelig immunsviktsykdom hos Border Collie.; Norsk Veterinærtidsskrift, 9: 567-568

Mok, M.T.S., Lawson, J.S., Iacopetta, B.J. and Whitaker, N.J. (2008): Mouse mammary tumor virus-like env sequences in human breast cancer.; International Journal of Cancer. 122: 2864-2870

Marcal H, Sarris M, Raftery MJ, Bhasin V, McFarland C and Mahler SM (2008): Expression proteomics of olfactory ensheathing cells.; Journal of Chemical Technology and Biotechnology 83: 473-481

Nordmann, P., Poirel, L., Mak, J.K., White, P.A., McIver, C.J. and Taylor, P. (2008): Multidrug-resistant Salmonella strains expressing emerging antibiotic resistance determinants.; Clinical Infectious Diseases. 46: 324-324.

Martino, D.J., Currie, H., Taylor, A., Conway, P. and Prescott, S.L. (2008): Relationship between early intestinal colonization, mucosal immunoglobulin A production and systemic immune development.; Clinical and Experimental Allergy. 38: 69-78.

Bradley, A.J., Kovacs, I.J., Gatherer, D., Dargan, D.J., Alkharsah, K.R., Chan, P.K.S., Carman, W.F., Dedicoat, M., Emery, V.C., Geddes, C.C., Gerna, G., Ben-Ismaeil, B., Kaye, S., McGregor, A., Moss, P.A., Pusztai, R., Rawlinson, W.D., Scott, G.M., Wilkinson, G.W.G., Schulz, T.F., Davison, A.J. (2008): Genotypic analysis of two hypervariable human cytomegalovirus genes.; Journal of Medical Virology. 80 (9): 1615-1623

Luciani, F., Francis, A.R. and Tanaka, M.M. (2008): Interpreting genotype cluster sizes of Mycobacterium tuberculosis isolates typed with IS6110 and spoligotyping; Infection Genetics and Evolution. 8: 182-190

Marcel H, Wanandy NS, Sanguanchaipaiwong V, Woolnough CE, Lauto A, Mahler SM and Foster LJR (2008): BioPEGylation of polyhydroxyalkanoates: Influence on properties and satellite-stem cell cycle.; Biomacromolecules 9: 2719-2726

Matz, C., Webb, J.S., Schupp, P.J., Phang, S.Y., Penesyan, A., Egan, S., Steinberg, P. and Kjelleberg, S. (2008): Marine biofilm bacteria evade eukaryotic predation by targeted chemical defense.; PLoS One. 3: e2744

McCarthy, F.R.K. and Brown, A.J. (2008): Autonomous Hedgehog signalling is undetectable in PC-3 prostate cancer cells.; Biochemical and Biophysical Research Communications. 373: 109-112.

Mishto, M., Luciani, F., Holzhutter, H.G., Bellavista, E., Santoro, A., Textoris-Taube, K., Franceschi, C., Kloetzel, P.M. and Zaikin, A. (2008): Modeling the in vitro 20S proteasome activity: The effect of PA28-alpha beta and of the sequence and length of polypeptides on the degradation kinetics.; Journal of Molecular Biology. 377: 1607-1617

zzzzz TO BE DELETED (mp) (2008): z; z

Low CP, Shui GH, Liew LP, Buttner S, Madeo F, Dawes IW, Wenk MR & Yang H, (2008): Caspase-dependent and -independent lipotoxic cell-death pathways in fission yeast.; J Cell Sci. 121: 2671-2684. (Selected as an editorial highlight by JCS)

Matz, C., Moreno, A.M., Alhede, M., Manefield, M, Hauser, A.R., Givskov, M and Kjelleberg, S. (2008): Pseudomonas aeruginosa uses type III secretion system to kill biofilm-associated amoebae.; ISME Journal. 2: 843-852.

Mackenzie, K.L., Marshall, C.P. and Walter, M.R. (2008): Regional organic geochemistry of host sediments of Palaeoproterozoic McArthur River Ore deposit, Australia.; Theoretical Chemistry Accounts. 119: 143-153.

Maharjan RP, Gu C, Reeves PR, Sintchenko V, Gilbert GL and Lan R. (2008): Genome-wide analysis of single nucleotide polymorphisms in Bordetella pertussis using comparative genomic sequencing.; Research in Microbiology. 159: 602-608

Manefield, M. (2008): The ecology of RNA; ISME Journal. 2: 1-2.

Manos J, Arthur J, Rose B, Tingpej P, Fung C, Curtis M, Webb JS, Hu HH, Kjelleberg S, Gorrell MD, Bye P and Harbour C. (2008): Transcriptome analyses and biofilm-forming characteristics of a clonal Pseudomonas aeruginosa from the cystic fibrosis lung.; Journal of Medical Microbiology. 57: 1454-1465.

Mahdi, L.E., Statzell-Tallman, A., Fell, J.W., Brown, M.V. and Donachie, S.P. (2008): Sympodiomycopsis lanaii sp. nov., a basidiomycetous yeast from Hawaii; FEMS Yeast Research

2007 : 89 Publications

Nakasugi K, Alexova R, Svenson CJ, Neilan BA. (2007): Functional analysis of PilT from the toxic cyanobacterium Microcystis aeruginosaPCC 7806; J Bacteriol. 2007 Mar;189(5):1689-97.

Muenchhoff J, Hirose E, Maruyama T, Sunairi M, Burns BP, Neilan BA (2007): Host specificity and phylogeography of the prochlorophyte Prochloron sp., an obligate symbiont in didemnid ascidians.; Environ Microbiol. 2007 Apr;9(4):890-9.

Marshall CP, S Leuko, CM Coyle, MR Walter, BP Burns, BA Neilan (2007): Carotenoid analysis of halophilic Archaea by resonance Raman Spectroscopy.; Astrobiology 7 (4),631-643.

Leuko S, F Goh, MA Allen, BP Burns, MR Walter, BA Neilan (2007): Analysis of intergenic spacer region length polymorphisms to investigate the halophilic archaeal diversity of stromatolites and microbial mats; Extremophiles 11, 203-210.

Copp JN, AA Roberts, MA Marahiel, BA Neilan (2007): Characterisation of NsPPT, a cyanobacterial phosphopantetheinyl transferase from Nodularia spumigena NSOR10.; Journal of Bacteriology 189(8):3133-3139

Pearson LA, KD Barrow and BA Neilan (2007): Characterization of the 2-hydroxy acid dehydrogenase, McyI, encoded within the microcystin biosynthesis gene cluster of Microcystis aeruginosa PCC7806.; J. Biol. Chem. 282(7):4681-92.

Moffitt MC, Neilan BA (2007): Characterization of the nodularin synthetase gene cluster and the evolution of cyanobacterial hepatotoxins,; Applied and Environmental Microbiology 70(11)

Pearson LA, Barrow KD, Neilan BA (2007): Functional analysis of PilT from the toxic cyanobacterium Microcystis aeruginosa PCC 7806.; Journal of Bacteriology 189(5), 1689-97.

Williams, G.E., Jenkins, R.J.F., & Walter, M.R. (2007): No heliotropism in neoproterozoic columnar stromatolite growth, Amadeus basin, Central Australia: Geophysical Implications.; Palaeogeography, Palaeoclimatology, Palaeoecology, 249 (1-2), 80-89.

Giaquinto, L., Curmi, P.M.G., Siddiqui, K.S., Poljak, A., DeLong, E., DasSarma, S. and Cavicchioli, R. (2007): The structure and function of cold shock proteins in archaea.; Journal of Bacteriology. 189: 5738-5748.

Cavicchioli, R. (2007): Archaea: Molecular and Cellular Biology.; ASM Press, Washington, DC, USA. (23 chapters, 556 pages) ISBN: 978-1-55581-391-8.

Battin, T. J., W. T. Sloan, S. Kjelleberg, H. Daims, I. M. Head, T. P. Curtis, and L. Eberl. (2007): Microbial landscapes: new paths to biofilm research.; Nature Reviews Microbiology. 5:76-81.

Ballard, J.W.O., R.G.Melvin, J.Miller, T. and S.D. Katewa. (2007): Sex differences in survival and disparity of mitochondrial bioenergetics in Drosophila simulans .; Aging Cell 6: 699-708.

Ballard, J.W.O., R.G Melvin, S.D. Katewa, and K.Maas. (2007): Mitochondrial DNA variation is associated with measurable differences in life history traits and mitochondrial metabolism in Drosophila simulans.; Evolution 61: 1735-1747.

Taylor CF, Paton NW, Lilley KS, Binz PA, Julian RK, Jones AR, Zhu W, Apweiler R, Aebersold R, Deutsch EW, Macht M, Mann M, Neubert TA, Patterson SD, Seymour SL, Tsugita A, Wilkins MR, Xenarios I, Hermjakob H. (2007): The Minimum Information About a Proteomics Experiment (MIAPE); Nature Biotechnology, 25(8): 887-893.

Helal, M, Mullin, L, El-Gindy H and Gaëta, B (2007): Optimal distributed multiple sequence alignment using conformal computing methods in Grgic M, Sung AH and Wang G eds,; Proceedings of the International Conference on High Performance Computing, Networking and Communication Systems HPCNCS-07, Orlando, Florida, USA, July 9-12

Cavicchioli, R. (Ed). (2007): Archaea: Molecular and Cellular Biology.; ASM Press, Washington, DC, USA. (23 chapters, 556 pages) ISBN: 978-1-55581-391-8.

Huang, E.H., Marquis, C.P. and Gray, P.P. (2007): Development of Super-CHO protein free medium based on a statistical design; Journal of Chemical Technology and Biotechnology 82:431-441

Foster, LJR (2007): Biosynthesis, Properties and Potential of Natural-Synthetic Hybrids of Polyhydroxyalkanoates and Polyethylene Glycols; Appl. Micro. Biotech. 75:1241-1247

Lee, C. E.H., Jackson, K.J. L., Sewell, W.A., and Collins, A.M. (2007): Use of IGHJ and IGHD gene mutations in analysis of immunoglobulin sequences for the prognosis of chronic lymphocytic leukemia; Leukemia Research 31: 1247-1252

Lauto, A; Stoodley, M; Marcel, H; Avolio, A; Sarris, M; McKenzie, G; Sampson, DD. & Foster, LJ. (2007): In vitro and in vivo tissue repair with laser-activated chitosan adhesive; Las. Surg. Med. 39:19-27

Foster, LJR; Russell, RA; Sanguanchaipaiwong, V; Stone, DJM; Hook, JM. & Holden, PJ. (2007): Biosynthesis and Characterisation of Deuterated Polyhydroxyoctanoate (PHO); Biomacromolecules 7:1344-1349

Craig, S. J., Shu, A., Yin Xu, Foong, F.C. and Nordon, R. (2007): Chimeric protein for selective cell attachment onto cellulosic substrates.; J. Biotechnology 121:165-173

Liu, J., Bulmus, V., Herlambang, D., Barner-Kowollik, C., Stenzel, M.H. & Davis, T.P. (2007): In-situ formation of protein-polymer conjugates via reversible addition fragmentation chain transfer polymerization.; Angewandte Chemie International Edn 46: 3099-3103

Boyer, C., Bulmus, V., Liu, J., Davis, T.P., Stenzel, M.H. & Barner-Kowollik, C. (2007): Well-defined protein-polymer conjugates via RAFT polymerization.; J. Am. Chem. Soc. 129: 7145-7154.

Liu, J., Bulmus, V., Barner-Kowollik, C., Stenzel, M.H. & Davis, T.P. (2007): Direct synthesis of pyridyldisulfide functionalized polymers by RAFT polymerization; Macromol. Rapid Comm., 28: 305-314. (Cover page article)

Jackson, K.J., Gaeta, B., and Collins, A.M. (2007): Identifying highly mutated IGHD genes in the junctions of rearranged human immunoglobulin heavy chain genes; Journal of Immunological Methods 324: 26-37

Ferrari BC and Bergquist PL. (2007): Quantum dots as alternatives to organic fluorophores for Cryptosporidium detection using conventional flow cytometry and specific monoclonal antibodies: lessons learned; Cytometry A. 71 (4): 265-271

Sutton, P., Doidge, C., Gideon Pinczower, Wilson, J., Harbour, S., Swierczak, A., Lee, A. (2007): Effectiveness of vaccination with recombinant HpaA from Helicobacter pylori is influenced by host genetic background.; FEMS Immunology & Medical Microbiology 50 (2), 213–219

Burke, C., Thomas, T., Egan, S. and Kjelleberg, S (2007): The use of functional genomics for the identification of an antifungal gene cluster in the epiphytic marine bacterium Pseudoalteromonas tunicata; Environmental Microbiology, 9:814-818

Evans, F.F., Raftery, M.J., Egan, S. and Kjelleberg, S. (2007): Profiling the secretome of the marine bacterium Pseudoalteromonas tunicata using amine-specific isobaric tagging (iTRAQ); Journal of Proteome Research, 6:967-75.

Thomas, T., Egan, S., Burg, D., Ng, C., Ting, L. and Cavicchioli, R (2007): Integration of genomic and proteomics into microbial ecology; Marine Ecology Progress Series, 332:291-299

Gaëta, B., Malming, H. R., Jackson, K.J. L., Bain, M.E., Wilson, P., and Collins, A. M. (2007): iHMMune-align: Hidden Markov model-based alignment and identification of germline segments in immunoglobulin gene sequences.; Bioinformatics 23: 1580-1587

Wong J, Quinn CM, Guilleman G, Brown AJ. (2007): Primary human astrocytes produce 24(S),25-epoxycholesterol with implications for brain cholesterol homeostasis.; J Neurochem;103:1764-73

Murray, S. (2007): Phylogenetics, molecular biology and ecological impacts of a group of unusual protists: the dinoflagellates.; In: Seckbach, J, (ed) Extremophilic Algae, Cyanobacteria and non-photosynthetic Protists: From Prokaryotes to Astrobiology. Springer Verlag.

Dong Q, Zhang L, Goh K, Forman D, O'Rourke J, Harris A, Mitchell H. (2007): Identification and characterisation of ssrA in members of the Helicobacter genus; Antonie Van Leeuwenhoek; 92(3):301-7

MacArthur, D.G., Seto, J.T., Raftery, J.M., Quinlan, K.G., Huttley, G.A., Hook, J.W., Lemckert, F.A., Kee, A.J., Edwards, M.R., Berman, Y., Hardeman, E.C., Gunning, P.W., Easteal, S., Yang, N. and North, K.N. (2007): Loss of ACTN3 gene function alters mouse muscle metabolism and shows evidence of positive selection in humans; Nature Genetics, 39, 1261-1265

Bull, R. A., M. M. Tanaka and P. A. White (2007): Norovirus recombination; Journal of General Virology. 88:3347-3359

Du X, Kristiana I, Wong J, Brown AJ. (2007): Involvement of Akt in ER-to-Golgi transport of SCAP/SREBP: A link between a key Cell Proliferative Pathway and Membrane Synthesis.; Mol. Biol. Cell;17:2735-45

Mallika Boonmee, Noppol Leksawasdi, Wallace Bridge, Peter Rogers (2007): "Electrodialysis for Lactate Removal in the Production of the Dairy Starter Culture Lactococcus lactis NZ133" International Journal of Food Science and Technology.; International Journal of Food Science and Technology, Vol 42. 567-572

Cavicchioli R, Demaere MZ, Thomas T (2007): Metagenomic studies reveal the critical and wide-ranging ecological importance of uncultivated archaea: the role of ammonia oxidizers.; Bioessays. 29(1): 11-14

Murray S, Nagahama Y, Fukuyo Y. (2007): A phylogenetic study of benthic spine-bearing prorocentroids, including Prorocentrum fukuyoi sp. nov.; Phycological Research. 55:91-101

Murray S, de Salas M, Luong-Van J, Hallegraeff G. M. (2007): A phylogenetic study of Gymnodinium dorsalisulcum comb. nov. from tropical Australian coastal waters (Dinophyceae).; Phycological Research.55: 176-182

Seebacher F, Murray S. (2007): Transient receptor potential ion channels control thermoregulatory behaviour in reptiles.; PLoS One, 2(3): e281. doi:10.1371/journal.pone.0000281

Octavia, S., and R. Lan (2007): Single-nucleotide-polymorphism typing and genetic relationships of Salmonella enterica serovar Typhi isolates; Journal of Clinical Microbiology 45:3795-3801

Sisson SA, Fan Y, Tanaka MM (2007): Sequential Monte Carlo without likelihoods; Proc Natl Acad Sci USA 2007, 104(6):1760–1765

Sutton, P., Doidge, C., Pinczower, G., Wilson, J., Harbour, S., Swierczak, A., Lee, A. (2007): Effectiveness of vaccination with recombinant HpaA from Helicobacter pylori is influenced by host genetic background; FEMS Immunology & Medical Microbiology 50 (2), 213–219.

Siddiqui KS, Francisci D, Thomas T (2007): Analysis of unfolding-refolding patterns and stabilities of proteins by transverse urea gradient gel electrophoresis (TUG-GE). In: Protein Structures; Methods in Protein Structure and Stability Analysis. (eds. Uversky VN & Permyakov AE) Nova Science Publishers, Inc., Hauppauge, NY, USA

Lawson JS, Heads J, Glenn WK, Whitaker NJ (2007): Breastfeeding, breast milk and viruses; BMC Women’s Health 2007;7:17-20

Shearman, JS, Wilton, AN (2007): Elimination of neutrophil elastase and adaptor protein complex 3 subunit genes as the cause of trapped neutrophil syndrome (TNS) in Border collies; Animal Genetics 38, 188–189

Faedo, M., Hinds, L.A., Singleton, G.R. and Rawlinson, W.D. (2007): Prevalence of Mouse Mammary Tumor Virus (MMTV) in wild house mice (Mus domesticus) in South Eastern Australia; Journal of Wildlife Diseases. 43: 668 - 674

Haber, P.S., Young, M.M., Dorrington, L., Jones, A., Kaldor, J., de Kanzow, S. and Rawlinson, W.D. (2007): Transmission of hepatitis C virus by needle stick injury in community settings.; Journal of Gastroenterology and Hepatology. 22(11):1882-1885

Scott, G.M., Weinberg, A., Rawlinson, W.D. and Chou, S. (2007): Multi-Drug Resistance Conferred by Novel DNA Polymerase Mutations in Human Cytomegalovirus Isolates.; Antimicrobial Agents and Chemotherapy. 51(1): 89-94

Ballard, JW. & Melvin, RG. (2007): Tetracycline treatment influences mitochondrial metabolism and mtDNA density two generations after treatment in Drosophila; Insect Molecular Biology, 16(6): 799-802

Melvin, RG., Van Voorhies, WA. & Ballard, JW. (2007): Working harder to stay alive: Metabolic rate increases with age in Drosophila simulans but does not correlate with life span; Journal of Insect Physiology, 53: 1300-1306

Iwasenko, J.M., Scott, G.M., Ziegler, J. and Rawlinson, W.D. (2007): Emergence and persistence of multiple antiviral-resistant CMV strains in a highly immunocompromised child.; Journal of Clinical Virology. 40:152-155.

Nguyen, O.K., Dore, G.J., Kaldor, J.M., Hellard, M.E., on behalf of the ATAHC Protocol Steering Committee (Baker, D., Crofts, N., Day, C., Dolan, K., Dore, G., Farrell, G., Ffrench, R., Haber, P., Hellard, M., Kaldor, J., Lloyd, A., Madden, A., Marks, P., Matthews, G., McCaughan, G., Petoumenos, K., Rawlinson, W., Sievert, W., Van Beek, I., White, P.) (2007): Recruitment and follow-up of injecting drug users in the setting of early hepatitis C treatment: Insights from the ATAHC study; The International Journal of Drug Policy. 18: 447-451

Lloyd, A.R., Jagger, E., Post, J., Crooks, L-A., Rawlinson, W.D., Hahn, Y. and Ffrench, R.A. (2007): Host and viral factors in the immunopathogenesis of primary hepatitis C virus infection.; (Review). Immunology and Cell Biology. 85: 24-32

Micallef J. M., Macdonald, V., Jauncey, M., Amin, J., Rawlinson, W. D., van Beek, I., Kaldor, J. M., White, P. A. & Dore, G. J. (2007): High incidence of hepatitis C virus reinfection within a cohort of injecting drug users.; Journal of Viral Hepatitis 14(6):413-8

Nguyen, O.K., Dore, G.J., Kaldor, J.M. & Hellard, M.E. (2007): Recruitment and follow-up of injecting drug users in the setting of early hepatitis C treatment: Insights from the ATAHC study; The International Journal of Drug Policy 18: 447-451

Tozer, S., Whiley, D.M., Lum, G., Rawlinson, W.D., Sammels, L.M., Sloots, T.P. and Nissen, M.D. (2007): Identification of Australian human respiratory syncytial virus strains containing a 60-nucleotide duplication within the G glycoprotein gene.; Pathology CPAT-2007-0181.R1.

Tu, E.T-V., Nguyen, T., Lee, P., Bull, R.A., Musto, J., Hansman, G., White, P.A., Rawlinson, W.D. and McIver, C. (2007): I Multiple Australian outbreaks in 2006 coincident with increased detection of norovirus G11.4 strains.; Emerging Infectious Diseases 13(7):1128-1130.

Lam, C. and Harder, T. (2007): Waterborne metabolites of marine macroalgae affect quantity and quality of bacterioplankton in close proximity; J Phycol. 43:874-881

Katewa, S. & Ballard, JW. (2007): Sympatric Drosophila simulans flies with distinct mtDNA show age related differences in mitochondrial metabolism; Insect Biochemistry and Molecular Biology, 37: 923-932

Dahms, H.U., Harder, T. & Qian, P.Y. (2007): Selective attraction and reproductive performance of a harpacticoid copepod in a response to biofilms; Journal of Expiermental Marine Biology and Ecology, 341: 228-238

Qian, P.Y., Lau, S.C.K., Dahms, H.U., Dobretsov, S. & Harder, T. (2007): Marine biofilms as mediators of colonization by marine macroorganisms: Implications for antifouling and aquaculture.; Marine Biotechnology, 9: 399-410

Ballard, JW., Katewa, S., Melvin, RG. & Chan, G. (2007): Comparative analysis of mitochondrial genotype and aging; Annals of New York Academy of Sciences, 1114. 93-106

Li, X.Z., Hauer, B., Rosche, B. (2007): Single-species microbial biofilm screening for industrial applications.; Applied Microbiol Biotech, 76: 1255-1262

Muller, A., Hauer, B. and Rosche, B. (2007): Asymmetric alkene reduction by yeast old yellow enzymes and by a novel Zymomonas mobilis reductase.; Biotech Bioeng 98: 22-29

Muller, A., Sturmer, R., Hauer, B. and Rosche, B. (2007): Stereospecific alkyne reduction: novel activity of Old Yellow Enzymes.; Angew Chem Int Ed 46: 3316-3318

Gunawan, C., Satianegara, G., Chen, A., Breuer, M., Hauer, B., Rogers, P., Rosche, B. (2007): Yeast pyruvate decarboxylases: Variation in biocatalytic characteristics for (R)-phenylacetylcarbinol production.; FEMS Yeast Research 7: 33-39

Nogai H, Rosowski M, Grün J, Rietz A, Debus N, Schmidt G, Lauster C, Janitz M, Vortkamp A, Lauster R. (2007): Follistatin antagonizes transforming growth factor-beta3-induced epithelial-mesenchymal transition in vitro: implications for murine palatal development supported by microarray analysis.; Differentiation, 76:404-416

Janitz, M. (2007): Assigning functions to genes - the main challenge of the post-genomic era.; Physiol Biochem Pharmacol. 159:115-129

Yee, L.H., Holmstrom, C., Fuary, E.T., Lewin, N.C., Kjelleberg, S., Steinberg, P.D. (2007): Inhibition of fouling by marine bacteria immobilised in k-carrageenan beads; Biofouling, 23:4, 287-294

Liu, J-P., Drungowski, M., Nyársik, L., Schwartz, R., Lehrach, H., Herwig, R. and Janitz, M. (2007): Oligonucleotide fingerprinting of arrayed genomic DNA sequences using LNA-modified hybridization probes.; Comb Chem High Throughput Screen. 10:269-276.

Delaney, S.K., Orford, S.J., Martin-Harris, M. and Timmis, J.N. (2007): The fiber specificity of the cotton FSltp4 gene promoter is regulated by an AT-rich promoter region and the AT-hook transcription factor GhAT1; Plant Cell Physiol. 48(10):1426-37. PMID: 17715150

Wilkins, M.R. (2007): Low versus High Order Proteomics: time to move up?; Journal of Proteome Research. 6 (7), 2403

Hsu, W-T., Pang, C.N.I., Sheetal, J. and Wilkins, M.R. (2007): Protein-protein interactions and disease: use of S. cerevisiae as a model system; BBA Proteins and Proteomics. 1774: 838-47

Pang, C.N.I., Hayen, A. and Wilkins, M.R. (2007): Surface accessibility of post-translational modifications.; Journal of Proteome Research. 6: 1833-45.

Cavicchioli, R. (2007): Antarctic metagenomics.; Microbiology Australia. 28: 98-103

Hoffman, A.S., Stayton, P.S., El-Sayed, M.E.H., Murthy, N., Bulmus, V., Lackey, C. & Cheung, C. (2007): Design of “smart” nano-scale delivery systems for biomolecular therapuetics.; Journal of Biomedical Nanotechnology, 3 (3), 213-217.

Bulmus V., Chan Y., Nguyen Q. & Tran H. (2007): Development of degradable P(HEMA) microgels: Use of acid-cleavable crosslinkers.; Macromolecular Bioscience, 7, 446-455. (Cover page article)

Beld, M.G.H.M., Birch, C., Cane, P.A., Carman, W., Claas, E.C.J., Clewley, J.P., Domingo, E., Druce, J., Escarmis, C., Fouchier, R.A.M., Foulongne, V., Ison, M.G., Jennings, L.C., Kaltenboeck, B., Kay, I.D., Kubista, M., Landt, O., Mackay, I.M., Mackay, J., Niesters, H.G.M., Nissen, M.D., Palladino, S., Papadopoulos, N.G., Petrich, A., Pfaffl, M.W., Rawlinson, W., Reischl, U., Saunders, N.A., Savolainen-Kopra, C., Schildgen, O., Scott, G.M., Segondy, M., Seibl, R., Sloots, T.P., Tang, Y-W., Tellier, R. and Woo, P.C.Y. (2007): Experts’ Roundtable: Real-time PCR and Microbiology; in Real-time PCR in Microbiology from diagnosis to characterization, I.M. Mackay, Chapter 10; page 357

Iwasenko, J.M., Scott, G.M., Ziegler, J.B. and Rawlinson, W.D. (2007): Emergence and persistence of multiple antiviral-resistant CMV strains in a highly immunocompromised child; Journal of Clinical Virology. 40(2):152-155

zzzzz TO BE DELETED (mp) (2007): z; z

Scott, G.M., Weinberg, A., Rawlinson, W.D. and Chou, S. (2007): Multi-Drug Resistance Conferred by Novel DNA Polymerase Mutations in Human Cytomegalovirus Isolates.; Antimicrobial Agents and Chemotherapy. 51(1): 89-94

Mattalan-Surget, S., Joux, F., Lebaron, P. and Cavicchioli, R. (2007): Isolement et caractérisation de bactéries marines oligotrophes (Isolation and characterization of marine oligotrophic bacteria).; Journal de la Société de Biologie (J Soc Biol). 201: 41-50

Brown, M.V. and Donachie, S.P. (2007): Evidence for tropical endemicity in the marine delta-Proetobacterial Marine Group B/SAR324 bacterioplankton clade.; Aquatic Microbial Ecology. 46:107-115

Donachie, S.P., Foster, J.S. and Brown, M.V. (2007): Culture clash: the dogma of microbial diversity.; ISME J. 1:97-99

2006 : 71 Publications

Burns BP, F Pomati, F Goh, SA Yasar, BA Neilan (2006): Stromatolites as a resource for novel natural products; Orig Life Evol Biosph. 36(5-6), 623-624

Goh F, S Leuko, MA Allen, JP Bowman, M Kamekura, BA Neilan, and BP Burns (2006): Halococcus hamelinensis sp. nov., a novel halophilic archaeon isolated from stromatolites in Shark Bay, Australia.; Int J Syst Evol Microbiol 56, 1323-1329.

Cavicchioli, R. (2006): Cold adapted Archaea.; Nature Reviews Microbiology 4: 331-343.

Saunders, N. F. W., Ng, C., Raftery, M., Guilhaus, M., Goodchild, A. and Cavicchioli, R. (2006): Proteomic and computational analysis of secreted proteins with type I signal peptides from the Antarctic archaeon Methanococcoides burtonii.; Journal of Proteome Research 5: 2457-2464.

Allwood, A.C., Walter, M.R., Kamber, B.S., Marshall, C.P.& Burch, W. (2006): Stromatolite reef from the early Archaean era of Australia; Nature 441, 714-718

Barraud, N., D. J. Hassett, S. Hwang, S. A. Rice, S. Kjelleberg , and J. S. Webb. (2006): Involvement of nitric oxide in biofilm dispersal of Pseudomonas aeruginosa.; J.Bacteriol. 188:7344-7353.

Brown, A.J., Cudahy, T.J., & Walter, M.R. (2006): Hydrothermal alteration at the panorama formation, North Pole dome, Pilbara Craton, Western Australia; Precambrian Research, 151 (3-4), 211-223.

Knoll, A.H., Walter, M.R., Narbonne, G.M., & Christie-Blick, N.( (2006): The ediacaran period: A new addition to the geologic time scale.; Lethaia, 39 (1), 13-30.

Melvin, R.G. and J.W.O. Ballard. (2006): Intraspecific variation in survival and mitochondrial oxidative phosphorylation in wild-caught Drosophila simulans.; Ageing Cell 5: 225-233.

Ho E, Hayen A, Wilkins MR (2006): Characterisation of organellar proteomes: subcellular proteomic fractionation and analysis.; Proteomics, 6: 5746-5757.

Wilkins MR, Appel RD, Van Eyk JE, Chung MCM, Görg A, Hecker MA, Huber LA, Langen H, Link AJ, Paik YK, Patterson SD, Pennington SR, Rabilloud T, Simpson RJ, Dunn MJ. (2006): Guidelines for the next 10 years of proteomics.; Proteomics 6: 4-8.

Cavicchioli, R. (2006): Cold adapted Archaea; Nature Reviews Microbiology 4: 331-343.

Siddiqui, K.S. and Cavicchioli, R. (2006): Cold adapted enzymes.; Annual Review of Biochemistry 75: 403-433.

Saunders, N. F. W., Ng, C., Raftery, M., Guilhaus, M., Goodchild, A. and Cavicchioli, R. (2006): Proteomic and computational analysis of secreted proteins with type I signal peptides from the Antarctic archaeon Methanococcoides burtonii .; Journal of Proteome Research 5: 2457-2464.

Giaquinto, L., Curmi, P.M.G., Siddiqui, K.S., Poljak, A., DeLong, E., DasSarma, S. and Cavicchioli, R. (2006): The structure and function of cold shock proteins in archaea.; Journal of Bacteriology. 189: 5738-5748

Craig, S. J., Foong, F. and Nordon, R. (2006): Engineered proteins containing the cohesin and dockerin domains from Clostridium thermocellum provides a reversible, high affinity interaction for biotechnology applications; J. Biotechnology 121:165-173

Ferrari BC., Tujula N,, Stoner K. and Kjelleberg S (2006): Catalysed Reporter Deposition-FISH allows for enrichment independent detection of microcolony forming soil bacteria; Applied and Environmental Microbiology.72(1): 918-922

Chan, Y., Bulmus, V., Zareie, M.H., Byrne, F., Barner, L. & Kavallaris, M. (2006): Acid-cleavable core-shell particles for delivery of hydrophobic drugs.; J. Control. Rel. 115: 197-207.

Lee CEH, Gaeta B, Malming HR, Bain ME, Sewell WA and Collins A.M. (2006): Reconsidering the immunoglobulin heavy chain locus. 1. An evaluation of the expressed human IGHD repertoire; Immunogenetics 57: 917-25.

Dahlke I., Nott D.J., Ruhno J., Sewell W.A. and Collins A.M. (2006): Antigen selection in the IgE response of allergic and non-allergic individuals.; J Allergy Clin Immunol. 117: 1477-83

Power M.L, Ferrari BC, Littlefield-Wyer J, Gordon DM, Slade MB. and Veal DA. (2006): A naturally occurring novel allele of Escherichia coli outer membrane protein A reduces sensitivity to bacteriophage; Applied and Environmental Microbiology;72(12): 7930-7932

Truong Q. and Ferrari BC (2006): Quantitative and Qualitative Comparisons of Cryptosporidium Faecal Purification Procedures for the Isolation of Oocysts suitable for Proteomic analysis; International Journal for Parasitology. 36:811-819

Stelzer, S., Egan, S., Larsen, M.R., Bartlett, D.H. and Kjelleberg, S. (2006): Unravelling the role of the ToxR-like Transcriptional regulator WmpR in the marine antifouling bacterium Pseudoalteromonas tunicata; Microbiology, 152: 1385-1394

Franks, A., Egan, S., Holmström, C., James, S., Lappin-Scott, H. and Kjelleberg, S. (2006): Inhibition of Fungal Colonization by Pseudoalteromonas tunicata provides a competitive advantage during surface colonization; Applied and Environmental Microbiology, 72:6079-6087

Dalisay, D.S., Webb, J.S., Scheffel, A., Svenson, C., James, S., Holmström, C., Egan, S. and Kjelleberg, S. (2006): A Mannose-Sensitive Hemagglutinin (MSHA)- like pilus promotes attachment of Pseudoalteromonas tunicata to the surface of the green alga Ulva australis; Microbiology, 152:2875-2883

Zhang L, Day A, McKenzie G, Mitchell H. (2006): Non-gastric Helicobacter species detected in the intestinal tract of children; J Clin Microbiol; 44:2276-2279.

White, J., McFadyen, W. D., Carland, M., Denny, W. A. & Murray, V. (2006): 9,9a-diphenyl-1,3,4,6,7,9a-hexahydro-2H-pyrazino[1,2-a]pyrimidine at 130 K.; Acta Crystallographica E62, o1846-o1848

Bull, R. A., E. T. V. Tu, C. J. McIver, W. D. Rawlinson and P. A. White (2006): Emergence of a new norovirus GII.4 variant associated with global outbreaks of gastroenteritis; Journal of Clinical Microbiology 44:327-333

Jones, L. A., L. E. Clancy, W. D. Rawlinson and P. A. White (2006): High affinity aptamers to subtype 3a HCV polymerase display genotypic specificity; Antimicrobial Agents and Chemotherapy 50:3019-2027

Gelissen I, Harris M, Rye KA, Quinn CM, Brown AJ, Kockx M, Cartland S, Packianathan M, Kritharides L, Jessup W. (2006): ABCA1 and ABCG1 Synergize to Mediate Cholesterol Export to ApoA-I.; Arterioscler Thromb Vasc Biol; 26: 534-40.

Catzel D, Chin DY, Stanton PG, Gray PP, Mahler SA (2006): Fractionation of follicle stimulating hormone charge isoforms in their native form by preparative electrophoresis technology; Journal of Biotechnology;122:73-85

Wong J, Quinn CM, Brown AJ. (2006): SREBP-2 positively regulates transcription of the cholesterol efflux gene, ABCA1 by generating oxysterol ligands for LXR.; Biochem. J.; 400:485-91

Zhang L and Mitchell H. (2006): The roles of mucus associated bacteria in IBD; Drugs of Today; 42(9): 605-616

Zhang L, Day A, Dong Q, Mitchell H. (2006): Avoiding errors in the identification and 16S rRNA sequencing data of members of the Helicobacteriaceae family detected in clinical samples.; Helicobacter; 11(2): 131-133

Bain M, Ahsan N, Potter J, Gaeta B, Temple M, Dawes I (2006): Learning causal networks from microarray data in M. Boden, T. Bailey Eds.; Intelligent systems for bioinformatics, Australian Computer Society Inc., Sydney, Australia, pp. 3-8.

Murray S, Hoppenrath M, Preisfeld A, Larsen J, Yoshimatsu S, Toriumi S, Patterson D. J. (2006): Phylogeny of Rhinodinium broomeense gen. et sp. nov., a thecate, marine sand-dwelling dinoflagellate.; Journal of Phycology. 42: 934–942

Murray S, Hoppenrath, M, Larsen, J, Patterson, D. J. (2006): Bysmatrum teres sp. nov., a new sand-dwelling dinoflagellate from north-western Australia.; Phycologia. 45(2):161-167

Hu, H., R. Lan, and P. R. Reeves (2006): Adaptation of multilocus sequencing to study variation within a major clone: evolutionary relationships of phage types in Salmonella enterica serovar Typhimurium; Genetics 172:743-750

Octavia, S., and R. Lan (2006): Frequent recombination and low level of clonality within Salmonella enterica subspecies; I. Microbiology 152:1099-1108

Wirth, T., D. Falush, R. Lan, F. Colles, P. Mensa, L. H. Wieler, H. Karch, P. R. Reeves, M. C. Maiden, H. Ochman, and M. Achtman (2006): Sex and virulence in Escherichia coli: an evolutionary perspective; Molecular Microbiology 60:1136-1151

Catts V, Catts S, McGrath J, Féron F, McLean D, Coulson E, Lutze-Mann LH (2006): Apoptosis and schizophrenia: A pilot study based on dermal fibroblast cell lines; Schizophrenia Research, 84 (1): 20-28

Fernandez HR, Batten M, Kugathasan K, Lutze-Mann LH (2006): Long-term mutagenic effects of ionising radiation on mice which vary in their p53 status.; DNA Repair, 7 (4): 641-7.

Tanaka MM, Francis AR (2006): Detecting emerging strains of tuberculosis by using spoligotypes; Proc Natl Acad Sci USA, 103(41):15266–15271

JS Lawson, DD Tran, E Carpenter, CE Ford, WD Rawlinson, NJ Whitaker, W Delprado (2006): Presence of mouse mammary tumour virus-like (MMTV-like) env gene sequences in some human breast tumours may be associated with histological characteristics typical of mouse mammary tumour virus (MMTV) associated mouse mammary tumours in experimental mice.; J. Clin Pathol: doi: 10.1136

Tanaka MM, Francis AR, Luciani F, Sisson SA (2006): Using approximate Bayesian computation to estimate tuberculosis transmission parameters from genotype data; Genetics 2006, 173(3):1511–1520

James S. Lawson, Walter Guenzburg, Noel J. Whitaker (2006): Viruses and human breast cancer.; Future Microbiol, 1, 33-51

Shearman, JS, Zhang QY, Wilton AN (2006): Exclusion of CXCR4 as the cause of Trapped Neutrophil Syndrome in Border Collies using 5 microsatellites on chromosome 19; Animal Genetics 37: 89

Glenn WK, Lawson JS, Whitaker NJ (2006): Mouse mammary tumour-like virus gene sequences and specific breast cancer morphology; J Clin Pathol, 60, 1071-1071

Lawson JS, Kan CY, Iacopetta BJ, Whitaker NJ. (2006): Are some breast cancers sexually transmitted?; Br J Cancer. 18;95(12):1708

Roesch-Ely M, Steinberg T, Muessig E, Whitaker N, Wiest T, Komposch, G, Tomakidi, P. (2006): Organotypic co-cultures allow for immortalized human gingival keratinocytes to reconstitute a gingival epithelial phenotype in vitro; Differentiation, 74, 1–16

Yang H. (2006): Nonvesicular sterol transport: two protein families and a sterol sensor?; Trends Cell Biol. 16: 427-32

Elledge AE, . Leung LK-P, Allen LR, Firestone K, Wilton AN (2006): Assessing the taxonomic status of dingoes, Canis familiaris dingo, for conservation; Mammal Review 36: 142-156

Dobretsov S, Dahms HU, Harder T, Qian PY (2006): Allelochemical defense of the macroalga Caulerpa racemosa against epibiosis: evidence of field and laboratory assays.; Mar Ecol Prog Ser 318: 165-175

Rittschof, D., Schmidt, G. & Harder, T. (2006): Evidence that 3-decanol in hermit crab blood signals shell availability to conspecifics.; Integrative and Comparative Biology, 46: E241-E241

Li, XZ., Webb, J.S., Kjelleberg, S., Rosche, B. (2006): Enhanced benzaldehyde tolerance in Zymomonas mobilis biofilms and the potential of biofilm applications in fine chemical production.; Appl Environ Microbiol 72: 1639-1644

Muller, A., Hauer, B., Rosche, B. (2006): Enzymatic reduction of the α,β-unsaturated carbon bond in citral.; J Mol Cat B: Enzymatic 38: 126-130

Li, D., Teoh, W.Y., Selomulya, C., Woodward, R.C., Amal, R. and Rosche, B. (2006): Flame-sprayed superparamagnetic bare and silica-coated maghemite nanoparticles: synthesis, characterization and protein adsorption-desorption; Chemistry of Materials. 18: 6403-6413

Satianegara, G., Rogers, P. and Rosche, B. (2006): Comparative studies on enzyme preparations and role of cell components for (R)-phenylacetylcarbinol production in a two-phase biotransformation; Biotech Bioeng. 94: 1189-1195

Satianegara, G., Breuer, M., Hauer, B., Rogers, P. and Rosche, B. (2006): Enzymatic (R)-phenylacetylcarbinol production in a benzaldehyde emulsion system with Candida utilis cells; Appl Microb Biotech. 70: 170-175

Leksawasdi, N., Rosche, B. and Rogers, P. (2006): Enzymatic processes for fine chemicals and pharmaceuticals: Kinetic simulation for optimal R-phenylacetylcarbinol production; In: Studies in Surface Science and Catalysis, New Developments and Application in Chemical Reaction Engineering, Vol. 159 (Hyun-Ku Rhee, In-Sik Nam and Jong Moon Park eds.) Elsevier Science: New York, ISBN 0-444-51733-2, pp 27-34.

Liu, J.P., Guerasimova, A., Schwartz, R., Lange, M., Lehrach, H., Nyarsik, L. and Janitz, M. (2006): LNA-modified oligodeoxynucleotide hybridization with DNA microarrays printed on nanoporous membrane slides.; Comb Chem High Throughput Screen. 9:591-597

Jann OC, Aerts J, Jones M, Hastings N, Law A, McKay S, Marques E, Prasad A, Yu J, Moore SS, Floriot S, Mahé M-F, Eggen A, Silveri L, Negrini R, Milanesi E, Ajmone-Marsan P, Valentini A, Marchitelli C, Savarese M, Janitz M, Herwig R, Hennig S, Gorni C, Connor E, Sonstegard T, Smith T, Drögemüller C, Williams JL. (2006): A second generation radiation hybrid map to aid the assembly of the bovine genome sequence; BMC Genomics, 7:283.

Hu, Y.H., Warnatz, H.J., Vanhecke, D., Wagner, F., Fiebitz, A., Thamm, S., Kahlem, P., Lehrach, H., Yaspo, M.L. and Janitz, M. (2006): Cell array-based intracellular localization screening reveals novel functional features of human chromosome 21 proteins; BMC Genomics. 7:155.

Vanhecke, D. and Janitz, M. (2006): High-Throughput Analysis of Gene Function in Mammalian Cells Using Transfected Cell Arrays; In: Encyclopedic Reference of Genomics & Proteomics in Molecular Medicine, Eds.: Ganten D, Ruckpaul K.; Springer Verlag, pp 795-799.

Janitz M, Vanhecke D, Lehrach H. (2006): High-throughput RNA interference in functional genomics.; Handb Exp Pharmacol, 173:97-104

van Holst Pellekaan, SM, Ingman, M, Roberts-Thomson, J., Harding, R. (2006): Mitochondrial genomics identifies major haplogroups in Aboriginal Australians; American Journal of Physical Anthropology, 131(2), 282-294

Delaney, S.K., Orford, S.J., Martin-Harris, M., Timmis, J.N. (2006): The genetic modification of cotton. In Cotton: science and technology .; Eds. Gordon S and Hsieh YH. Woodhead Textiles Series No. 59, Woodhead Publishing, Cambridge, England. (ISBN 1 84569 026 5)

van Holst Pellekaan, SM (2006): MtDNA diversity in Aboriginal Australians and near neighbours.; Homo-Journal of Comparative Human Biology, 57(3), 241

van Holst Pellekaan, SM, Harding, R. (2006): Excavating the mitochondrial genome identifies major haplogroups in Aboriginal Australians; Before Farming (1)

Wilkins, M.R. (2006): How proteomics can assist in the detection and avoidance of adverse drug reactions.; Transfusion Medicine and Hemotherapy. 33, 97-105

Fuhrman, J.A., Hewson, I., Schwalbach, M.S., Steel, J., Brown, M.V. and Naeem, S. (2006): Annually reoccurring bacterioplankton communities are predictable from ocean conditions.; Proceedings of the National Academy of Science, USA. 103:13104-13109

2005 : 69 Publications

Perrone, G.G., Tan, S.X. and Dawes, I.W. (2005): Reactive oxygen species and yeast apoptosis.; Biochimica Et Biophysica Acta-Molecular Cell Research. 1783: 1354-1368.

Siddiqui, K.S., Poljak, A., Guilhaus, M., Feller, G., DeAmico, S., Gerday, C. and Cavicchioli, R. (2005): The role of disulfide-bridges in the activity and stability of a cold-active Î± -amylase.; Journal of Bacteriology 187: 6206â€“ 6212.

Stelzer-Braid S., Escott R., Baleriola C., Kirkland P., Robertson P., Catton M., Rawlinson W. D. (2005): Proficiency of nucleic acid tests for avian influenza viruses, Australasia.; Emerging Infectious Diseases 14: 1126 - 1128

Rao D, Webb JS & Kjelleberg S. (2005): Competitive interactions in mixed-species biofilms containing the marine bacterium Pseudoalteromonas tunicata.; Appl. Environ. Microbiol. 71:1729-1736.

Rice SA, Koh KS, Queck SY, Labbate M, Lam KW & Kjelleberg S. (2005): Biofilm formation and sloughing in Serratia marcescens are controlled by quorum sensing and nutrient cues.; J. Bacteriol. 187:3477-3485.

Matz C, McDougald D, Moreno AM, Yung PY, Yildz F & Kjelleberg S. (2005): Biofilm formation and phenotypic enhance predation-driven persistence of Vibrio cholerae.; PNAS. 102:16819-16824.

Ballard, J.W.O. and D. M. Rand. (2005): The population biology of mitochondrial DNA and its phylogenetic implications.; Ann. Rev. Ecol. Evol. Syst.36: 621-642

Brown, A.J., Walter, M.R., & Cudahy, T.J. (2005): Hyperspectral imaging spectroscopy of a mars analogue environment at the North Pole dome, Pilbara Craton, Western Australia.; Australian Journal of Earth Sciences, 52 (3), 353-364

Park, J-I., Collinson, E.J., Grant, C.M. and Dawes, I.W. (2005): Rom2p, the Rho1p GTP/GDP exchange factor, interacts with the Ras-cAMP pathway for stress resistance of Saccharomyces cerevisae.; J. Biol. Chem. 280, 2529-2535.

Dilda, P.J., Don, A.S., Tanabe, K., Higgins, V.J., Allen, J.D., Dawes, I.W. and Hogg, P.J. (2005): Mechanism of selectivity of an angiogenesis inhibitor from screening a genome-wide set of Saccharomyces cerevisiae deletion strains.; J. Nat. Cancer Inst. 97, 1539-1547.

Marshall, C.P., Javaux, E.J., Knoll, A.H., & Walter, M.R. (2005): Combined micro-fourier transform infrared (FTIR) spectroscopy and micro-raman spectroscopy of proterozoic acritarchs: A new approach to palaeobiology.; Precambrian Research, 138 (3-4), 208-224.

Hunt SMN, Thomas MR, Sebastian LT, Pedersen SK, Harcourt RL, Sloane AJ, Wilkins MR (2005): Optimal replication and the importance of experimental design for gel-based quantitative proteomics.; Journal of Proteome Research 4: 809-819.

Siddiqui, K.S., Poljak, A., Guilhaus, M., Feller, G., D’Amico, S., Gerday, C. and Cavicchioli, R. (2005): The role of disulfide-bridges in the activity and stability of a cold-active a-amylase.; Journal of Bacteriology 187: 6206–6212.

Goodchild, A., Raftery, M., Saunders, N.F.W., Guilhaus, M. and Cavicchioli, R. (2005): Cold adaptation of the Antarctic archaeon, Methanococcoides burtonii assessed by proteomics using ICAT; Journal of Proteome Research 4: 473-480

Marquis, C.P., Baird, A.H., de Nys, R., Holmstrom, C. and Koziumi, N. (2005): An evaluation of the antimicrobial properties of the eggs of eleven species of scleractinian corals.; Coral Reefs 24:248-253

Ferrari BC, Binnerup S and Gillings MR (2005): Microcolony cultivation on a soil-substrate membrane system selects for previously uncultured soil bacteria; Applied and Environmental Microbiology. 71 (12):8174-8720

Jackson N.E., Wang H.W., Tedla N., McNeil H.P., Geczy C.L., Collins A.M., et al. (2005): IL-15 induces mast cell migration via a pertussis toxin-sensitive receptor; Eur. J. Immunol.; 35:2376-85

Coleman, H.M., Marquis, C.P., Scott, J.A., Chin, S.-S, Amal, R. (2005): Bactericidal effects of titanium-dioxide-based photocatalysts; Chemical Engineering Journal, (Environmental Chemical Engineering) 113:55-63

Albertin, L; Stenzel, MH; Barner-Kowollik, C; Foster, LJR & Davis, TP. (2005): Well Defined Diblock Glycopolymers from RAFT Polymerisation in Homogeneous Aqueous Medium; Macromolecules 38:9075-9084

Foster, LJR; Sanguanchaipaiwong, V; Gabelish, C. & Hook, J. (2005): A Natural-Synthetic Hybrid Copolymer of Polyhydroxyoctanoate-Diethylene Glycol: Biosynthesis and Properties.; Polymer 46:6587-6594

Yeh, M., Craig, S. J. , Lum, M. G. and Foong, F. (2005): Effects of the PT linker region of EngD and HLD of CbpA on solubility, catalytic activity and purification characteristics of EngD-CBDCbpA chimeric proteins from Clostridium cellulovorans; J. Biotechnology 116: 233-244

Su, Ping, Henriksson, A., Tandanius, J., Park, J.H., Foong, F. and Dunn, N. (2005): Detection and quantification of Bifidobacterium lactis LAFTIB94 in human faecal samples from a consumption trial; FEMS Microbiol. Lett. 244:99-103

Stayton P.S., Hoffman A.S., El-Sayed M., Kulkarni S., Shimoboji T., Murthy N., Bulmus V. & Lackey C. (2005): Intelligent biohybrid materials for therapeutic and imaging agent delivery.; Proceedings of The IEEE 93(4), 726-736.

Stayton P.S., El-Sayed M.E.H., Murthy N, Bulmus V., Lackey C., Cheung C. & Hoffman A.S. (2005): Smart delivery systems for biomolecular therapeutics.; Orthodontics and Craniofacial Research, 8, 219-225.

Bulmus, V. (2005): Biomembrane active molecular switches as tools for intracellular drug delivery; Aust. J. Chem. 58: 411-422. (Invited review)

Chan V, Crocetti G, Grehan M, Zhang L, Danon S, Lee A, Mitchell HM. (2005): Visualisation of Helicobacter species within the murine caecal mucosa using specific Fluorescence in situ Hybridisation.; Helicobacter;10:114-124

Zhang L, Danon S, Grehan M, Chan V, Lee A, Mitchell H. (2005): Natural colonisation with Helicobacter species and the development of inflammatory bowel disease in interleukin-10-deficient mice; Helicobacter; 10(3): 223-230

Zhang L, Danon S, Grehan M, Lee A, Mitchell H (2005): The template DNA ratio can affect the detection by genus specific PCR- denaturing gradient gel electrophoresis of bacteria present in low abundance in mixed populations; Helicobacter;10:80-82

Temple, M. D. & Murray, V. (2005): Footprinting the 'essential regulatory region' of the retinoblatoma gene promoter in intact human cells; International Journal of Biochemistry and Cell Biology 37, 665-678

Carland, M., Tan, K. J., White, J. M., Stephenson, J., Murray, V., Denny, W. A. & McFadyen, W. D. (2005): Syntheses, crystal structure and cytotoxicity of diamine platinum(II) complexes containing maltol; J. Inorg. Biochem. 99, 1738-1743

Carland, M., Abrahams, B., Denny, W. A., Murray, V. & McFadyen, W. D. (2005): Hydrogen-bonded networks from novel platinum(II) dimers; CrystEngComm 7, 701-705.

Mok, M.T.S. and Edwards, M.R. (2005): Critical sources of error in colorimetric assay for UDP-N-acetylglucosamine pyrophosphorylase; Anal. Biochem. 343, 341-343

Kim, K.T., Mok, M.T.S. and Edwards, M.R. (2005): Protein kinase B from Giardia intestinalis; Biochem. Biophys. Res. Comm. 334, 333-341

Mok, M.T.S. and Edwards, M.R. (2005): Kinetic and physical characterization of the inducible UDP-N-acetylglucosamine pyrophosphorylase from Giardia intestinalis; J. Biol. Chem. 280, 39363-39372

Mok, M.T.S., Sekyere, E., Glenn, W.K., Bagnara, A.S. and Edwards, M.R. (2005): Giardia intestinalis: Molecular characterization of UDP-N-acetylglucosamine pyrophosphorylase.; Gene 357, 73-82

Bull, R. A., G. S. Hansman, L. E. Clancy, M. M. Tanaka, W. D. Rawlinson and P. A. White (2005): Norovirus Recombination in ORF1/ORF2 Overlap; Emerging Infectious Diseases 11:1079-1085

Tominaga, A., R. Lan, and P. R. Reeves (2005): Evolutionary changes of the master flagellar flhDC operon in Shigella strains; Journal of Bacteriology 187:4295-4302

C-Y Kan, BJ Iacopetta, JS Lawson and NJ Whitaker (2005): Identification of human papillomavirus DNA gene sequences in human breast cancer.; Br J Cancer, 93, 946 – 948

Murray S, Flø Jørgensen M, Ho S. Y. W., Patterson, D. J., Jermiin, L. S. (2005): Improving the analysis of dinoflagellate phylogeny based on rDNA.; Protist. 156:269-286

Lan, R., M. C. Alles, K. Donohoe, M. B. Martinez, and P. R. Reeves (2005): Relationships of pathogenic clones of Vibrio cholerae .; Emerging Infectious Diseases 11:1758-1760

Bachmann PS, Gorman R, MacKenzie KL, Lutze-Mann LH, Lock, RB (2005): Dexamethasone resistance in B-cell precursor childhood acute lymphoblastic leukemia occurs downstream of ligand-induced nuclear translocation of the glucocorticoid receptor; Blood 105 (6): 2519-252

Catts VS, Catts SV, Fernandez HR, Taylor JM, Coulson EJ, Lutze-Mann LH (2005): A microarray study of post-mortem mRNA degradation in mouse brain tissue.; Molecular Brain Research 138 (2): 164-177

Kan, C-Y, Iacopetta, BJ, Lawson, JS and Whitaker, NJ (2005): Identification of human papillomavirus DNA gene sequences in human breast cancer; Br J Cancer, 93, 946 – 948

Tanaka MM, Francis AR (2005): Methods of quantifying and visualising outbreaks of tuberculosis using genotypic information.; Infect Genet Evol, 5(1):35–43

Regoes RR, Antia R, Crotty S, Tanaka MM (2005): Optimal replication of poliovirus within cells; Am Nat 2005, 165(3):364–37

Melville SA, Wilson CL, Chiang CS, Studdert VP, Lingaas F, Wilton AN (2005): A mutation in canine CLN5 causes Neuronal Ceroid Lipofuscinosis in Border Collie dogs; Genomics 86 287 – 294

Irion DN, Schaffer AL, Grant S, Wilton AN and Pedersen NC (2005): Genetic variation analysis of the Bali Street Dog using microsatellites; BMC Genetics 6:6

Wang P, Duan, W., Munn AL and Yang H. (2005): Molecular characterization of Osh6p, an oxysterol binding protein homolog in the yeast Saccharomyces cerevisiae; FEBS Journal (European Journal of Biochemistry), 272(18): 4703-15.

Wang P, Zhang Y, Li H, Chieu HK, Munn AL and Yang H. (2005): AAA ATPases Regulate Membrane Association of Yeast Oxysterol Binding Proteins and Cellular Sterol Metabolism; EMBO Journal. 24(17): 2989-99

Kittelmann, S. & Harder, T. (2005): Species- and site-specific bacterial communities associated with four encrusting bryozoans from the North Sea, Germany.; Journal of Experimental Marine Biology and Ecology, 327: 201-209

Ballard, JW. (2005): Drosophila simulans as a novel model for studying mitochondrial metabolism and aging; Experimental Gerontology, 40(10): 763-773

R. A. Evans, T. L. Hanley, M. A. Skidmore, T. P. Davis, G. K. Such, L. H. Yee, G. E. Ball, D. A. Lewis (2005): The generic enhancement of photochromic dye switching speeds in a rigid polymer matrix; Nature Materials 4(3), 249-253

Leksawasdi, N., Rogers, P. amd Rosche, B. (2005): Improved enzymatic two-phase biotransformation for (R)-phenylacetylcarbinol: Effect of dipropylene glycol and modes of pH control.; Biocat Biotrans. 23: 445 - 451

Chen, A.K., Breuer, M., Hauer, B., Rogers, P. and Rosche, B. (2005): pH shift enhancement of Candida utilis pyruvate decarboxylase production; Biotech Bioeng. 92: 183-188

Sandford, V., Breuer, M., Hauer, B., Rogers, P. and Rosche, B. (2005): (R)-phenylacetylcarbinol production in aqueous/organic two-phase systems using partially purified pyruvate decarboxylase from Candida utilis; Biotech Bioeng. 91: 190-198

Rosche B, Breuer M, Hauer B, Rogers P (2005): Cells of Candida utilis for in vitro (R)-phenylacetylcarbinol production in an aqueous/octanol two-phase reactor; Biotech Letters 27: 575-581.

Leksawasdi, N., Rosche, B. and Rogers, P. (2005): Mathematical model for kinetics of enzymatic conversion of benzaldehyde and pyruvate to (R)-phenylacetylcarbinol.; Biochem Eng J. 23: 211-220

Rosche, B., Breuer, M., Hauer, B. and Rogers, P. (2005): Role of pyruvate in enhancing pyruvate decarboxylase stability towards benzaldehyde; J Biotech. 115: 91-99.

Guerasimova, A., Nyarsik, L., Liu, J.P., Schwartz, R., Lange, M., Lehrach, H. and Janitz, M. (2005): Liquid-based hybridization assay with real-time detection in miniaturized array platforms.; Biomol Eng. 23:35-40.

Hu, Y.H., Vanhecke, D., Lehrach, H. and Janitz, M. (2005): High-throughput subcellular protein localization using cell arrays; Biochem Soc Trans. 33:1407-1408

Vanhecke D, Janitz M. (2005): Functional genomics using high-throughput RNA interference; Drug Discov Today, 10:205-212.

Gutjahr, C., Murphy, D., Lueking, A., Koenig, A., Janitz, M., O'Brien, J., Korn, B., Horn, S., Lehrach, H. and Cahill, D.J. (2005): Mouse protein arrays from a TH1 cell cDNA library for antibody screening and serum profiling; Genomics. 85:285-296

van Holst Pellekaan, SM, Clague, L. (2005): Toward health and wellbeing for indigenous Australians; Postgraduate Medical Journal, 81(960), 618-624

Brown, M.V. and Fuhrman, J.A. (2005): Marine bacterial microdiversity as revealed by internal transcribed spacer analysis.; Aquatic Microbial Ecology 41:15-23

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Schwalbach, M.S., Brown, M.V. and Fuhrman, J.A. (2005): Impact of light on marine bacterioplankton community structure; Aquatic Microbial Ecology. 39:235-245

Brown, M.V., Schwalbach, M.S., Hewson, I. and Fuhrman, J.A. (2005): Coupling 16S-ITS clone libraries and automated ribosomal intergenic spacer analysis to show marine microbial diversity: development and application to a time series.; Environmental Microbiology. 7:1466-1479

2004 : 63 Publications

Burns BP, F Goh, M Allen and BA Neilan (2004): Microbial diversity of extant stromatolites in the hypersaline marine environment of Shark Bay, Australia.; Environ Micro 6, 1096-1101.

Gehringer MM, Shephard EG, Downing TG, Wiegand C, Neilan BA (2004): An investigation into the detoxification of microcystin-LR by the glutathione pathway in Balb/c mice.; International Journal of Biochemistry and Cell Biology 36(5)

Burns B; F Goh; M Allen; Neilan BA (2004): Microbial diversity of extant stromatolites in the hypersaline marine environment of Shark Bay, Australia.; Environmental Microbiology 6; 1096-1101.

Pearson LA, Hisburgues M, Dittmann E, Börner T, Neilan BA (2004): Inactivation of an ABC transporter gene, mcyH, results in loss of microcystin production in the cyanobacterium Microcystis aeruginosa PCC7806; Applied and Environmental Microbiology 70(11), 6370-8.

Webb JS, Lau M & Kjelleberg S. (2004): Bacteriophage and phenotypic variation in Pseudomonas aeruginosa biofilm development.; J. Bacteriol. 186:8066-8073.

Ballard, J.W.O. (2004): Sequential evolution of a symbiont inferred from the host: Wolbachia and Drosophila simulans.; Mol. Biol. Evol. 21: 428-442.

Ballard, J.W.O. and M.C. Whitlock. (2004): The incomplete natural history of mitochondria.; Mol. Ecol.13: 729-744.

Gelling, C.L., Piper, M.D.W., Hong, S-P., Kornfeld, G.D. and Dawes, I.W. (2004): Identification of a novel one-carbon regulon in Saccharomyces cerevisiae .; J. Biol. Chem. 279, 7072-7081.

Thorpe, G.W., Fong, C.S., Alic, N., Higgins, V.J. and Dawes, I.W. (2004): Cells have distinct mechanisms to maintain protection against different reactive oxygen species: oxidative stress-response genes.; Proc. Nat. Acad. Sci. USA, 101, 6564-6569.

Alic, N., Felder, T., Temple, M.D., Gloeckner, C., Higgins, V.J., Briza, P. and Dawes I.W. (2004): The transcriptional response to a lipid hydroperoxide in yeast: adaptation occurs without induction of oxidant defences.; Free Rad. Biol. Med. 37, 23-35.

Brown, A., Walter, M., & Cudahy, T. (2004): Short-wave infrared reflectance investigation of sites of paleobiological interest: Applications for Mars exploration.; Astrobiology, 4 (3), 359-376

Goodchild, A., Saunders, F.W., Ertan, H., Raftery, M., Guilhaus, M., Curmi, P.M.G. and Cavicchioli, R. (2004): A proteomic determination of cold adaptation in the Antarctic archaeon, Methanococcoides burtonii .; Molecular Microbiology 53: 309-321.

Arthur, JW and Wilkins, MR. (2004): Using proteomics to mine genome sequences.; Journal of Proteome Research 3: 393-402.

Goodchild, A., Raftery, M., Saunders, N.F.W., Guilhaus, M. and Cavicchioli, R. (2004): The biology of the cold-adapted archaeon, Methanococcoides burtonii determined by proteomics using liquid chromatography-tandem mass spectrometry.; Journal of Proteome Research 3: 1164-1176

Matz C, Bergfeld T, Rice SA & Kjelleberg S. (2004): Microcolonies, quorum sensing and cytotoxicity determine survival of Pseudomonas aeruginosa biofilms exposed to protozoan grazing.; Environ. Microbiol. 6:218-226

Webb JS, Lau M & Kjelleberg S. (2004): Bacteriophage and phenotypic variation in Pseudomonas aeruginosa biofilm development; J. Bacteriol. 186:8066-8073.

Huang, E., Marquis, C.P and Gray, P.P (2004): Process development for a recombinant Chinese Hamster Ovary Cell Culture with a metal-induced and amplified metallothionine expression system.; Biotechnology and Bioengineering 88(4):437-450

M. Toh, M.C. Moffitt, L. Henrichsen, J.M. Cox, C.P. Marquis, P. Mortensen, C.L. Hansen, and B.A. Neilan (2004): Cereulide, the emetic toxin of Bacillus cereus, is putatively a product of non-ribosomal peptide synthesis.; Journal of Applied Microbiology 97(5): 992-1000.

Toh, M., , Moffitt, M.C., Henrichsen, L., Cox, J.M., Marquis, C.P., Mortensen, P., Hansen, C.L. and Neilan, B.A. (2004): Cereulide, the emetic toxin of Bacillus cereus, is putatively a product of non-ribosomal peptide synthesis.; Journal of Applied Microbiology 97(5): 992-1000.

Albertin, L; Stenzel, M; Barner-Kowollik, C; Foster, LJR. & Davis, TP. (2004): Well-Defined Glycopolymers from RAFT Polymerisation: Poly(methyl-6-O-methacryloyl-α-D-glucoside) and its Block Copolymers with 2-Hydroxyethyl Methacrylate; Macromolecules 37:7530-7537

Albertin, L; Kohlert, C; Stenzel, M; Foster, LJR. & Davis, TP. (2004): Chemoenzymatic Synthesis of Narrow-Polydispersity Glycopolymers: Poly(6-O-Vinyladipoyl-D-Glucopyranose); Biomacromolecules. 5:255-260

Ben-David, EA; Holden, PJ; Stone, DJM; Harch, BD. & Foster, LJR (2004): The Use of Phospholipid Fatty Acid Analysis to Measure Impact of Acid Rock Drainage on Microbial Communities in Sediments; Microb. Ecol. 48:300-315

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Ferrari BC, Oregaard G and Sørensen S. (2004): Studying the purity and recovery of GFP-labelled bacteria for culturing and molecular analysis following fluorescence activated cell sorting using a benchtop flow cytometer; Microbial Ecology 48(2): 239-245

Sutton P., O'Rourke J., Wilson J., Dixon M.F. & Lee A. (2004): Immunisation against Helicobacter felis infection protects against the development of gastric MALT lymphoma; Vaccine 22: 2541-2546

L. J. Thompson, S. J. Danon, J. E. Wilson, J. L. O'Rourke, N. R. Salama, S. Falkow, H. Mitchell, and A. Lee (2004): Chronic Helicobacter pylori Infection with Sydney Strain 1 and a Newly Identified Mouse-Adapted Strain (Sydney Strain 2000) in C57BL/6 and BALB/c Mice; Infection and Immunity. Vol. 72, No. 8:4668-4679

Mai-Prochnow, A., Evans, F., Dalisay-Saludes, D., Stelzer, S., Egan, S., James, S., Webb. J., and Kjelleberg, S. (2004): Biofilm development and cell death in the marine bacterium Pseudoalteromonas tunicata; Applied and Environmental Microbiology, 70: 3232-3238.

Grehan M, Danon S, Lee A, Daskalopoulos G, Mitchell H. (2004): Absence of mucosa-associated colonic helicobacters in an Australian urban population; J Clin Microbiol 42:874-879.

Thompson LJ, Danon SJ, Wilson JE, O'Rourke JL, Salama NR, Falkow S, Mitchell H, Lee A. (2004): Chronic Helicobacter pylori infection with Sydney Strain 1 and a newly identified mouse-adapted strain (Sydney Strain 2000) in C57BL/6 and BALB/c mice; Infect Immun;72:4668-4679

Jackson K.J., Gaeta B., Sewell W., Collins A.M. (2004): Exonuclease activity and P nucleotide addition in the generation of the expressed immunoglobulin repertoire.; BMC Immunology 5:19

Day AS, Mitchell HM, Bohane TD. (2004): Management guidelines for Helicobacter pylori infection: Utilization by paediatric gastroenterologists in Australasia.; J Paed Child Health;40:195-200

Collins, A.M., M. Ikutani, D. Puiu, G.A. Buck, A. Nadkarni, and B. Gaeta (2004): Partitioning of rearranged immunoglobulin genes by mutation analysis demonstrates D-D fusion and V gene replacement in the expressed human repertoire.; J Immunol. 172:340

Temple, M. D., Freebody, J. & Murray, V. (2004): Genomic and phylogenetic footprinting at the epsilon-globin silencer region in intact human cells; Biochim. Biophys. Acta 1678, 126-134

Davies, N. P., Freebody, J. & Murray, V. (2004): Chromatin structure at the flanking regions of the human beta globin locus control region DNase I hypersensitive site-2: Proposed nucleosome positioning by DNA-binding proteins including GATA 1; Biochim. Biophys. Acta 1679, 201-213

Lloyd, D., Harris, J.C., Biagini, G.A., Hughes, M.R., Maroulis, S.L., Bernard, C., Wadley, R.B. and Edwards, M.R. (2004): The plasma membrane of microaerophilic protisits: oxidative and nitrosative stress.; Microbiol. 150, 1183-1190

Paget, T., Maroulis, S., Mitchell, A., Edwards, M.R., Jarroll, E.L. and Lloyd, D. (2004): Menadione kills trophozoites and cysts of Giardia intestinalis; Microbiol. 150, 1231-1236

Wong J, Quinn CM, Brown AJ. (2004): Statins inhibit synthesis of an oxysterol ligand for the liver x receptor in human macrophages with consequences for cholesterol flux.; Arterioscler Thromb Vasc Biol.; 24: 2365-71

Du, X., Pham, Y.H., Brown, A.J. (2004): Effects of 25-hydroxycholesterol on cholesterol esterification and sterol regulatory element-binding protein processing are dissociable: implications for cholesterol movement to the regulatory pool in the endoplasmic reticulum.; J Biol Chem. 279:47010-6

Lenzen M, Dey C. J., Murray S. (2004): Historical accountability and cumulative impacts: the treatment of time in corporate sustainability reporting.; Ecological Economics 51:237-250

Rezwan, F., R. Lan, and P. R. Reeves. (2004): Molecular basis of indole negative reaction in Shigella strains: extensive damages of tna operon by IS sequences; Journal of Bacteriology 186:7460-7465

Lan, R., M. C. Alles, K. Donohoe, M. B. Martinez, and P. R. Reeves (2004): Molecular evolutionary relationships of enteroinvasive Escherichia coli and Shigella spp; Infection and Immunity 72:5080-5088

Tucker JD, Marples B, Ramsey MJ, Lutze-Mann LH (2004): Persistence of Chromosome Aberrations in Mice Acutely Exposed to 56Fe+26 Ions; Radiation Research 161: 648-655

Flø Jørgensen M, Murray S, Daugbjerg N (2004): A new genus of athecate interstitial dinoflagellates, Togula gen. nov., previously encompassed within Amphidinium sensu lato – inferred from light and electron microscopy and phylogenetic analyses of partial LSU rDNA sequences.; Phycological Research. 52:284-299

Whitaker, N. & Takayama, K (2004): Computer-aided visualisation in teaching genomics and bioinformatics; FASEB Journal, 2004, 18, 6-7

Murray, S. and Patterson, D. J. (2004): Cabra matta, gen. nov. sp. nov., a new heterotrophic benthic dinoflagellate.; European Journal of Phycology 39:229-234

Flø Jørgensen, M, Murray, S, Daugbjerg, N. (2004): Amphidinium revisited I. Redefinition of Amphidinium (Dinophyceae) based on cladistic and molecular phylogenetic analyses.; Journal of Phycology 40:351-365

Tanaka MM, Rosenberg NA, Small PM (2004): The control of copy number of IS6110 in Mycobacterium tuberculosis; Mol Biol Evol 2004, 21(12):2195–2201

Tanaka MM (2004): Evidence for positive selection on Mycobacterium tuberculosis within patients; BMC Evol Biol 2004, 4(1):31

Murray S, Flø Jørgensen, M, Daugbjerg, N. Rhodes, L (2004): Amphidinium revisited II. Resolving species boundaries in the Amphidinium operculatum species complex (Dinophyceae) including the descriptions of Amphidinium trulla sp. nov. and Amphidinium gibbosum comb. nov.; Journal of Phycology 40:366-382

Savolainen P, Leitner, T., Wilton, AN., Matisoo-Smith, E., Lundeberg, J. (2004): A detailed picture of the Origin of the Australian Dingo, obtained from a study of mitochondrial DNA; Proc Natl Acad Sci USA 101: 12387-12390

Zhang S., Ren J., Zhang Q., Armstrong J.S., Munn A.L. and Yang H (2004): Ncr1p, the yeast ortholog of mammalian Niemann Pick C1 protein, is dispensable for endocytic transport; Traffic, 5(12): 1017-1030

Dahms, H.U., Harder, T. & Qian, P.Y. (2004): Effect of meiofauna on macrofauna recruitment: settlement inhibition of the polychaete Hydroides elegans by the harpacticoil copepod Tisbe japonica.; Journal of Experimental Marine Biology and Ecology, 311: 47-61

Harder, T., Lau, S.C.K., Tam, W.Y. and Qian, P.Y. (2004): A bacterial culture-independent method to investigate chemically-mediated control of bacterial epibiosis in marine invertebrates by using TRFLP analysis and natural bacterial populations.; FEMS Microb. Ecol. 47: 93-99

Harder, T., Dobretsov, S. & Qian, P.Y. (2004): Waterborne polar macromolecules act as algal antifoulants in the seaweed Ulva reticulata.; Marine Ecology-Progress Series, 274: 133-141

Rosche, B., Breuer, M., Hauer, B. and Rogers, P. (2004): Biphasic aqueous/organic biotransformation of acetaldehyde and benzaldehyde by Zymomonas mobilis pyruvate decarboxylase; Biotech Bioeng 86: 788-794

Leksawasdi, N., Breuer, M., Hauer, B., Rosche, B. and Rogers, P. (2004): Kinetic analysis and modelling of enzymatic (R)-phenylacetylcarbinol batch biotransformation process; J Biotech. 111: 179–189.

Illiger, J., Herwig, R., Steinfath, M., Przewieslik, T., Elge, T., Bull, C., Radelof, U., Lehrach, H. and Janitz M. (2004): Establishment of T cell-specific and natural killer cell-specific unigene sets: towards high-throughput genomics of leukaemia.; Eur J Immunogenet. 6:253-257.

Vanhecke, D. and Janitz, M. (2004): High-throughput gene silencing using cell arrays; Oncogene. 23:8353-8358.

Bauer O, Guerasimova A, Sauer S, Thamm S, Steinfath M, Herwig R, Janitz M, Lehrach H, Radelof U. (2004): Multiplexed hybridizations of positively charge-tagged peptide nucleic acids detected by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry.; Rapid Commun Mass Spectrom, 18:1821-1829

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Caron, D.A., Countway, P.D. and Brown, M.V. (2004): The Growing Contributions of Molecular Biology and Immunology to Protistan Ecology: Molecular Signatures as Ecological Tools; The Journal of Eukaryotic Microbiology. 51:38-48

2003 : 51 Publications

Moffitt M, Neilan BA (2003): Evolution and distribution of ketosynthases associated with complex biosynthetic pathways.; ournal of Molecular Evolution 56(4), 446-457.

Neilan BA; ML Saker; J Fastner; A Torokne; BP Burns (2003): Phylogeography of the invasive cyanobacterium Cylindrospermopsis raciborskii.; Molecular Ecology 12:133-140.

Saunders, N., Thomas, T., Curmi, P.M.G., Mattick, J.S., Kuczek, E., Slade, R., Davis, J., Franzmann, P.D., Boone, D., Rusterholtz, K., Feldman, R., Gates, C., Bench, S., Sowers, K., Kadner, K., Aerts, A., Dehal, P., Detter, C., Glavina, T., Lucas, S., Richardson, P., Larimer, F., Hauser, L., Land, M. and Cavicchioli, R. (2003): Mechanisms of thermal adaptation revealed from the genomes of the Antarctic Archaea, Methanogenium frigidum and Methanococcoides burtonii.; Genome Research 13: 1580-1588

Harder T, Lau S C K, Dobretsov S, Fang T K, Qian P Y (2003): A distinctive epibiotic bacterial community on the soft coral Dendronephthya sp. and antibacterial activity of coral tissue extracts suggest a chemical mechanism against bacterial epibiosis; FEMS Microb Ecol 43: 337-347

Webb JS, Thompson LS, James S, Charlton T, Tolker-Nielsen T, Koch B, Givskov M & Kjelleberg S. (2003): Cell death in Pseudomonas aeruginosa biofilm development.; J. Bacteriol. 185:4585-4592.

Mackintosh JA, Choi HY, Bae SH, Veal DA, Bell PJ, Ferrari BC, Van Dyk DD, VerrillsNM, Paik YK, Karuso P. (2003): A fluorescent natural product for ultra sensitive detection of proteins in 1-D and 2-D gel electrophoresis.; Proteomics. 3 (12): 2273-2288.

James, A.C. and J.W.O. Ballard. (2003): Mitochondrial genotype affects fitness in Drosophila simulans.; Genetics 164: 173-186.

Dean, M. D., K. J.Ballard, A. Glass A., and J. W. O. Ballard. (2003): Influence of two Wolbachia strains on population structure of east African Drosophila simulans.; Genetics 16: 159-169.

Hentzer M, Wu H, Andersen JB, Riedel K, Rasmussen TB, Bagge N, Kumar N, Schembri MA, Song Z, Kristoffersen P, Manefield M, Costerton JW, Molin S, Eberl L, Steinberg P, Kjelleberg S, Hoiby N & Givskov M. (2003): Attenuation of Pseudomonas aeruginosa virulence by quorum sensing inhibitors.; EMBO Journal. 22:3803-3815.

Pedersen SK, Harry JL, Sebastian L, Baker J, Traini MD, McCarthy JT, Manoharan, Wilkins MR, Gooley AA, Righetti PG, Packer NH, Williams KL, Herbert BR. (2003): Unseen proteome: mining below the tip of the iceberg to find low abundance and membrane proteins.; Journal of Proteome Research 2:303-11.

Cooper CA, Joshi HJ, Harrison MJ, Wilkins MR, Packer NH (2003): GlycosuiteDB : a curated relational database of glycoprotein glycan structures and their biological sources.; Nucleic Acids Research 31: 511-513.

Shen, Y., Knoll, A.H., & Walter, M.R (2003): Evidence for low sulphate and anoxia in a mid-proterozoic marine basin; Nature, 423 (6940), 632-635

Grey, K., Walter, M.R., & Calver, C.R. (2003): Neoproterozoic biotic diversification: Snowball earth or aftermath of the acraman impact?; Geology, 31 (5), 459-462

Chen, J., Walter, M.R., Logan, G.A., Hinman, M.C., & Summons, R.E. (2003): The paleoproterozoic McArthur river (HYC) Pb/Zn/Ag deposit of Northern Australia: Organic geochemistry and ore genesis.; Earth and Planetary Science Letters, 210 (3-4), 467-479.

Catzel, D., Lalevski, H., van Dyk, D., Gray, P., Marquis C.P. and Mahler, S.M. (2003): Purification of human growth hormone using Gradiflow technology.; Protein Expression and Purification. 32: 126-134

Ferrari BC and Veal DA. (2003): Analysis-only Detection of Giardia by Combining Immunomagnetic Separation and Two-Color Flow Cytometry.; Cytometry ;51(2):79-86

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Ferrari BC, Attfield PA, Veal DA. and Bell P. (2003): Application of the novel fluorescent dye Beljian red to the differentiation of Giardia cysts; Journal of Microbiological Methods 52 (1): 133-135

Harris A, Wilson JE, Danon SJ, Donegan K, Hazell SL (2003): Catalase (KatA) and KatA associated protein (KapA) are essential to persistent colonization in the Helicobacter pylori SS1 mouse model; Microbiology. 149: 665-72

Nolan KJ, McGee DJ, Mitchell HM, Kolesnikow T, Harro JM, O’Rourke J, Wilson JE, Danon SJ, Moss ND, Mobley HTL, Lee A (2003): In vivo behaviour of a Helicobacter pylori SS1 nixA mutant with reduced urease activity; Infection & Immunity. 70: 685-691

Merrell DS, Thompson LJ, Kim CC, Mitchell H, Tompkins LS, Lee A, and Falkow S. (2003): Growth phase dependent response to iron starvation in Helicobacter pylori.; Infect Immun;71:6510-6525.

Thompson LJ, Merrell DS, Neilan BA, Mitchell H, Lee A, Falkow S. (2003): Gene expression profiling of Helicobacter pylori reveals a growth phase dependent switch in virulence gene expression.; I Infect Immun 71:2643-265

Xia HH, Talley NJ, Blum AC, O'Morain CA, Stolte M, Bolling-Sternvald E, Mitchell HM. (2003): Clinical and pathological implications of IgG antibody responses to Helicobacter pylori and its virulence factors in non-ulcer dyspepsia; Aliment Pharmacol Therapeut 17:1-9

Collins, A.M., Sewell, W.A. and Edwards, M.R. (2003): Immunoglobulin gene rearrangement, repertoire diversity and the allergic response; Pharmacol. Ther. 100:157

Robillard, M. S., Davies, N. P., van der Marel, G. A., van Boom, J. H., Reedijk, J. & Murray, V. (2003): The interaction of peptide-tethered platinum(II) complexes with DNA.; J. Inorgan. Biochem. 96, 331-338

Biagini, G.A., Yarlett, N., Ball, G.E., Billetz, A.C., Lindmark, D.G., Martinez, M.P., Lloyd, D.A. and Edwards, M.R. (2003): Bacteria-like energy metabolism in the amitochondriate protozoon Hexamita inflata; Mol. Biochem. Parasitol. 128, 11-19

Maroulis, S.L., Schofield, P.J. and Edwards, M.R. (2003): Osmoregulation in the parasitic protozoan Tritrichomonas foetus .; Appl. Environ. Microbiol. 69, 4527-4533

Lloyd, D., Maroulis, S.L., Mitchell, A., Hughes, M.N., Wadley, R.B. and Edwards, M.R. (2003): Nitrosative stress induced cytotoxicity in Giardia intestinalis; J. Appl. Microbiol. 95, 576-583

Mallika Boonmee, Noppol Leksawasdi, Wallace Bridge, Peter Rogers. (2003): “Batch and continuous culture of Lactococcus lactis NZ133: experimental data and model development”.; Biochemical Engineering Journal. Vol. 14, 127-135

Bain M, Gaeta B, (2003): Learning Quantitative Gene Interactions from Microarray Data in S. Simoff, G. Williams, M. Hegland Eds; Proceedings of 2nd Australasian Data Mining Workshop,  University Technology Sydney, Sydney, pp. 35 – 49

Lan, R., A. M. Davison, P. R. Reeves, and L. R. Ward (2003): AFLP analysis of Salmonella enterica serovar Typhimurium isolates of phage types DT 9 and DT 135: diversity within phage types and its epidemiological significance; Microbes and Infection 5:841-850.

Collins, A., Ikutani, M., Puiu, D., Buck, G., Nadkarni, A., & Gaeta, B. (2003): Partitioning of rearranged Ig genes by mutation analysis demonstrates D-D fusion and V gene replacement in the expressed human repertoire; J. Immunol , 172:340-348

Lan, R., G. Stevenson, and P. R. Reeves (2003): Comparison of two major forms of the Shigella virulence plasmid pINV: positive selection is a major force driving the divergence; Infection and Immunity 71:6298-6306

Scheffner M, Whitaker NJ (2003): Human papillomavirus-induced carcinogenesis and the ubiquitin-proteasome system.; Semin Cancer Biol, 2003, 13: 59-67

Tanaka MM, Bergstrom CT, Levin BR (2003): The evolution of mutator genes in bacterial populations: the roles of environmental change and timing; Genetics, 164(3):843–854

Banks SC, Horsup A, Wilton AN and Taylor AC (2003): Genetic marker investigation of the source and impact of predation on a highly endangered species; Molecular Ecology 12: 1663-1667

Walsh SJ, Turbett GR, Robinson SL, Davies NP, Wilton AN (2003): Characterisation of variant alleles at the HumD21S11 locus implies unique Australasian genotypes and re-classification of nomenclature guidelines; Forensic Science International 135: 35-41

Tan JH, Low PS, Tan YS, Tong MC, Saha N, Yang H*, Heng CK (2003): ABCA1 gene polymorphisms and their associations with coronary artery disease and plasma lipids in males from three ethnic populations in Singapore; Hum Genet. 113(2):106-17

Zhang Q, Chieu HK, Low CP, Zhang S, Heng CK and Yang H. (2003): Schizosaccharomyces pombe Cells Deficient in Triacylglycerols Synthesis Undergo Apoptosis upon Entry into the Stationary Phase; J Biol. Chem. 278(47): 47145-55

Lau, S.C.K., Harder, T. and Qian, P.Y. (2003): Induction of larval settlement in the serpulid polychaete Hydroides elegans (Haswell): Role of bacterial extracellular polymers.; Biofouling. 19: 197-204

Lam, C., Harder, T. & Qian, P.Y. (2003): Induction of larval settlement in the polychaete Hydroides elegans by surface-associated settlement cues of marine benthic diatoms.; Marine Ecology-Progress Series, 263: 83-92

Thiyagarajan, V., Harder, T., & Qian, P.Y. (2003): Combined effects of temperature and salinity on larval development and attachment of the subtidal barnacle Balanus trigonus Darwin.; Journal of Experimental Marine Biology and Ecology, 287: 223-236

Thiyagarajan, V., Harder, T. & Qian, P.Y. (2003): Effects of TAG/DNA ratio and age of cyprids on post-metamophic growth and survival of the barnacle Balanus amphitrite.; Journal of the Marine Biological Association of the United Kingdom, 83: 83-88

Thiyagarajan, V., Harder, T., Qiu, J.W. & Qian, P.Y. (2003): Energy content at metamorphosis and growth rate of the early juvenile barnacle Balanus amphitrite.; Marine Biology, 143: 543-554

G. Such, R. Evans, L. H. Yee, T. P. Davis (2003): Factors Influencing Photochromism of Spiro – compounds within Polymeric Matrices; NJ Macromol Sci Polymer Rev Vol C43, No. 4, 545-577

Leksawasdi, N., Breuer, M., Hauer, B., Rosche, B. and Rogers, P. (2003): Kinetics of pyruvate decarboxylase deactivation by benzaldehyde; Biocat Biotrans. 21: 315-320

Rosche B, Breuer M, Hauer B, Rogers P (2003): Increased pyruvate efficiency in enzymatic production of (R)-phenylacetylcarbinol; Biotech Letters 25: 847‑851

Rosche, B., Breuer, M., Hauer, B. and Rogers, P. (2003): Sreening of yeast for enzymatic (R)-phenylacetylcarbinol production; Biotech Letters. 25: 841-845

Bauer O, Herwig R, Radelof U, Lehrach H, Janitz M. (2003): OFP – oligonucleotide fingerprinting. In: Analysing Gene Expression.; A Handbook of Methods, Possibilities and Pitfalls. Eds.: Lorkowski S, Cullen P.; Wiley-VCH, pp.463-471.

Malecova, B., Ramser, J., O'Brien, J.K., Janitz, M., Judova, J., Lehrach, H.and Simuth, J. (2003): Honeybee (Apis mellifera L.) mrjp gene family: computational analysis of putative promoters and genomic structure of mrjp1, the gene coding for the most abundant protein of larval food.; Gene. 303:165-175.

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The School of Biotechnology and Biomolecular Sciences at UNSW

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2009 : 42 Publications

2008 : 185 Publications

2007 : 89 Publications

2006 : 71 Publications

2005 : 69 Publications

2004 : 63 Publications

2003 : 51 Publications

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